Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   IBC08_RS02315 Genome accession   NZ_CP061019
Coordinates   430541..430984 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24853     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 425541..435984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS02295 (IBC08_02280) - 426061..426815 (-) 755 Protein_396 NUDIX hydrolase -
  IBC08_RS02300 (IBC08_02285) - 426879..427985 (-) 1107 WP_014608024.1 AAA family ATPase -
  IBC08_RS02305 (IBC08_02290) gdhA 428329..429681 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  IBC08_RS02310 (IBC08_02295) - 429940..430350 (+) 411 WP_011680804.1 peptide deformylase -
  IBC08_RS02315 (IBC08_02300) rcrR 430541..430984 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  IBC08_RS02320 (IBC08_02305) rcrP 430988..432802 (+) 1815 WP_179971475.1 ABC transporter ATP-binding protein Regulator
  IBC08_RS02325 (IBC08_02310) rcrQ 432792..434570 (+) 1779 WP_207559749.1 ABC transporter ATP-binding protein Regulator
  IBC08_RS02330 (IBC08_02315) - 434726..435097 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=479463 IBC08_RS02315 WP_002945408.1 430541..430984(+) (rcrR) [Streptococcus thermophilus strain 24853]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=479463 IBC08_RS02315 WP_002945408.1 430541..430984(+) (rcrR) [Streptococcus thermophilus strain 24853]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537