Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JN057_RS08570 Genome accession   NZ_CP071871
Coordinates   1672047..1673318 (+) Length   423 a.a.
NCBI ID   WP_001113215.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BVJ1JL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1667047..1678318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN057_RS08535 (JN057_01751) - 1668113..1668541 (-) 429 WP_000418168.1 NUDIX hydrolase -
  JN057_RS08540 (JN057_01752) - 1668522..1669610 (-) 1089 WP_000719722.1 site-2 protease family protein -
  JN057_RS08545 (JN057_01753) - 1669629..1670099 (-) 471 WP_000257097.1 DUF3013 family protein -
  JN057_RS08550 (JN057_01754) - 1670390..1670842 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  JN057_RS08555 - 1670879..1671057 (-) 179 Protein_1705 type II toxin-antitoxin system HicA family toxin -
  JN057_RS08560 - 1671194..1671373 (-) 180 WP_001048906.1 hypothetical protein -
  JN057_RS08565 (JN057_01755) - 1671538..1671777 (-) 240 WP_000818078.1 hypothetical protein -
  JN057_RS08570 (JN057_01756) rarA 1672047..1673318 (+) 1272 WP_001113215.1 replication-associated recombination protein A Machinery gene
  JN057_RS08580 (JN057_01758) - 1673738..1674865 (-) 1128 WP_061370788.1 tyrosine-type recombinase/integrase -
  JN057_RS08585 (JN057_01759) - 1674867..1675049 (-) 183 WP_000655516.1 DUF3173 domain-containing protein -
  JN057_RS08590 (JN057_01760) - 1675065..1676108 (-) 1044 WP_061370789.1 hypothetical protein -
  JN057_RS08595 (JN057_01761) - 1676242..1676505 (-) 264 WP_000665587.1 hypothetical protein -
  JN057_RS08600 (JN057_01762) - 1676681..1677988 (-) 1308 WP_061370790.1 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47008.42 Da        Isoelectric Point: 5.9140

>NTDB_id=479115 JN057_RS08570 WP_001113215.1 1672047..1673318(+) (rarA) [Streptococcus pneumoniae strain BVJ1JL]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=479115 JN057_RS08570 WP_001113215.1 1672047..1673318(+) (rarA) [Streptococcus pneumoniae strain BVJ1JL]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTATCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.435

96.69

0.565