Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JZ789_RS11485 Genome accession   NZ_CP071806
Coordinates   2309857..2311140 (+) Length   427 a.a.
NCBI ID   WP_024396140.1    Uniprot ID   -
Organism   Streptococcus suis strain GX69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2304857..2316140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ789_RS11455 (JZ789_11365) - 2305051..2306313 (-) 1263 WP_002939093.1 hypothetical protein -
  JZ789_RS11460 (JZ789_11370) - 2306327..2307073 (-) 747 WP_024396144.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JZ789_RS11465 (JZ789_11375) prmA 2307075..2308028 (-) 954 WP_024396143.1 50S ribosomal protein L11 methyltransferase -
  JZ789_RS11470 (JZ789_11380) - 2308625..2308978 (-) 354 WP_014636733.1 ASCH domain-containing protein -
  JZ789_RS11475 (JZ789_11385) - 2308980..2309450 (-) 471 WP_024396142.1 DUF3013 family protein -
  JZ789_RS11480 (JZ789_11390) - 2309452..2309787 (-) 336 WP_024396141.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  JZ789_RS11485 (JZ789_11395) rarA 2309857..2311140 (+) 1284 WP_024396140.1 replication-associated recombination protein A Machinery gene
  JZ789_RS11500 (JZ789_11410) nrdG 2311620..2312177 (-) 558 WP_024384254.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  JZ789_RS11505 (JZ789_11415) - 2312364..2312858 (-) 495 WP_024395943.1 GNAT family N-acetyltransferase -
  JZ789_RS11510 (JZ789_11420) - 2312860..2314206 (-) 1347 WP_024395944.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  JZ789_RS11930 - 2314208..2314342 (-) 135 WP_014638808.1 hypothetical protein -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 47202.72 Da        Isoelectric Point: 6.4385

>NTDB_id=479036 JZ789_RS11485 WP_024396140.1 2309857..2311140(+) (rarA) [Streptococcus suis strain GX69]
MPANLALRMRPKSIDDVIGQEHLVGSGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTTHIRQALE
LALTDSERGFDFPVTIEPEALDFLSNATNGDLRAAYNSLELAVLSTKESEGGRHIDLDAVENSLQKSYISMDKNGDAHYD
NLSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVV
DLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLQADYFTAN
DTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=479036 JZ789_RS11485 WP_024396140.1 2309857..2311140(+) (rarA) [Streptococcus suis strain GX69]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCAAAATCCATTGATGATGTCATCGGTCAGGAACACCTGGTCGGTTCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGAATTGGCAAGACCT
CGATTGCGTCCGCAATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAGGCTAAGTTTTCTGGCGGTCTGGTTCTCCTGCTCGATGAAATCCACCGCCTTAACAAGACCAA
GCAGGACTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGGGTGCAGATTTTTGAGTTGCAACCTTTGCAAACCACCCATATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGCGAACGTGGTTTTGATTTTCCCGTCACCATTGAACCTGAGGCTCTGGACTTTCTGTCAAATGC
GACAAACGGTGACCTTCGTGCCGCCTATAATTCACTAGAACTGGCTGTGCTTTCGACCAAGGAAAGTGAGGGCGGACGCC
ATATCGACTTGGACGCTGTGGAAAATAGCCTACAGAAATCCTACATCAGCATGGACAAGAACGGCGATGCCCACTACGAC
AACCTCTCCGCTCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGAGGC
AGAAGACCTGCCTAGTCTGGCCCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTCAGA
TTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATTGGCTTTCCAGAAGCACGGATTTTGATTGCCAATGTGGTAGTC
GATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTACGGAAAAACGGCCA
TCTGCCCATCCCAAATCACCTGCGGGACGGTCACTATGCCGGTAGTAAGGAGCTGGGAAATGCCATTGGCTACCAGTATC
CGCATGCCTATCCTGAAAAATGGGTGGACCAACAATACCTGCCTGATAAGTTACTTCAAGCGGACTACTTCACTGCCAAC
GACACTGGAAAATATGAGCGTGCCTTGGGTATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAATCC
TTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-250)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.892

0.581