Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JZ789_RS10245 Genome accession   NZ_CP071806
Coordinates   2048996..2049784 (-) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain GX69     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2043996..2054784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ789_RS10220 (JZ789_10130) - 2044144..2045421 (-) 1278 WP_170244708.1 uracil-xanthine permease family protein -
  JZ789_RS10225 (JZ789_10135) - 2045815..2046662 (+) 848 WP_141669245.1 IS630 family transposase -
  JZ789_RS10230 (JZ789_10140) - 2046758..2047432 (-) 675 WP_012774968.1 hydrolase -
  JZ789_RS10235 (JZ789_10145) rplS 2047618..2047965 (-) 348 WP_011921928.1 50S ribosomal protein L19 -
  JZ789_RS10240 (JZ789_10150) - 2048443..2048994 (-) 552 WP_170244873.1 cysteine hydrolase family protein -
  JZ789_RS10245 (JZ789_10155) codY 2048996..2049784 (-) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JZ789_RS10250 (JZ789_10160) - 2049936..2051150 (-) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  JZ789_RS10255 (JZ789_10165) - 2051305..2051757 (+) 453 WP_004195772.1 universal stress protein -
  JZ789_RS10260 - 2051773..2053138 (-) 1366 Protein_2001 Cof-type HAD-IIB family hydrolase -
  JZ789_RS10265 (JZ789_10180) - 2053207..2054165 (+) 959 Protein_2002 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=479023 JZ789_RS10245 WP_023369388.1 2048996..2049784(-) (codY) [Streptococcus suis strain GX69]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=479023 JZ789_RS10245 WP_023369388.1 2048996..2049784(-) (codY) [Streptococcus suis strain GX69]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTTCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCAAG
ATCGACTTATCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGAATTCGTTTTGGTTCGCTTATTATTTGGC
GAAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACGGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTGTCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496