Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JZ789_RS06500 Genome accession   NZ_CP071806
Coordinates   1292153..1293922 (-) Length   589 a.a.
NCBI ID   WP_024394364.1    Uniprot ID   -
Organism   Streptococcus suis strain GX69     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1287153..1298922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ789_RS06480 (JZ789_06415) murB 1287774..1288682 (-) 909 WP_024394366.1 UDP-N-acetylmuramate dehydrogenase -
  JZ789_RS06485 (JZ789_06420) thrB 1288918..1289778 (-) 861 WP_011922331.1 homoserine kinase -
  JZ789_RS06490 (JZ789_06425) - 1289782..1291068 (-) 1287 WP_014637977.1 homoserine dehydrogenase -
  JZ789_RS06495 (JZ789_06430) - 1291173..1292096 (+) 924 WP_024394365.1 polysaccharide deacetylase family protein -
  JZ789_RS06500 (JZ789_06435) rcrQ 1292153..1293922 (-) 1770 WP_024394364.1 ABC transporter ATP-binding protein Regulator
  JZ789_RS06505 (JZ789_06440) rcrP 1293931..1295667 (-) 1737 WP_012775079.1 ABC transporter ATP-binding protein Regulator
  JZ789_RS06510 (JZ789_06445) - 1295743..1295985 (-) 243 WP_012028079.1 KH domain-containing protein -
  JZ789_RS06515 (JZ789_06450) rpsP 1296007..1296279 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  JZ789_RS06520 (JZ789_06455) - 1296404..1296712 (-) 309 WP_024394363.1 DUF4298 domain-containing protein -
  JZ789_RS06525 (JZ789_06460) pcp 1296712..1297359 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  JZ789_RS06530 (JZ789_06465) - 1297356..1298111 (-) 756 WP_024394362.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65889.82 Da        Isoelectric Point: 5.1568

>NTDB_id=478996 JZ789_RS06500 WP_024394364.1 1292153..1293922(-) (rcrQ) [Streptococcus suis strain GX69]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEVAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=478996 JZ789_RS06500 WP_024394364.1 1292153..1293922(-) (rcrQ) [Streptococcus suis strain GX69]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTGCTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTTGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCATAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCACTAGAGTTGACAGAAAGTCTGACCGG
ACAAGTCAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAGATAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGTCCAACAGGGGCAGGTAAGACTACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCTCGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGTTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAAGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
GTCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435