Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JZM58_RS25630 Genome accession   NZ_CP071797
Coordinates   5759373..5759774 (-) Length   133 a.a.
NCBI ID   WP_039771691.1    Uniprot ID   A0ABY3Q010
Organism   Pseudomonas fluorescens strain YK-310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5754373..5764774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS25610 (JZM58_25610) - 5755011..5755244 (+) 234 WP_115079251.1 PP0621 family protein -
  JZM58_RS25615 (JZM58_25615) pilS 5755234..5756823 (+) 1590 WP_207986265.1 ATP-binding protein Regulator
  JZM58_RS25620 (JZM58_25620) - 5756820..5758166 (+) 1347 WP_207983968.1 sigma-54 dependent transcriptional regulator -
  JZM58_RS25625 (JZM58_25625) thiO 5758215..5759315 (-) 1101 WP_207983969.1 glycine oxidase ThiO -
  JZM58_RS25630 (JZM58_25630) comF 5759373..5759774 (-) 402 WP_039771691.1 type IV pilin protein Machinery gene
  JZM58_RS25635 (JZM58_25635) - 5759790..5762882 (-) 3093 WP_207983970.1 PilC/PilY family type IV pilus protein -
  JZM58_RS25640 (JZM58_25640) - 5762869..5763348 (-) 480 WP_207983971.1 PilX N-terminal domain-containing pilus assembly protein -
  JZM58_RS25645 (JZM58_25645) - 5763359..5764072 (-) 714 WP_207983972.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JZM58_RS25650 (JZM58_25650) pilV 5764069..5764518 (-) 450 WP_207983973.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14646.77 Da        Isoelectric Point: 9.7660

>NTDB_id=478934 JZM58_RS25630 WP_039771691.1 5759373..5759774(-) (comF) [Pseudomonas fluorescens strain YK-310]
MRRSNRGFTLIEIMIVIAIIGIVITIGYPSLTEYVKKGRRADVVSNLSEQAQILERFYSKNNVYTGVTGLSTGNDFYTIT
PTITDQTFLLTATRKTGTAMATDKCGDFTLTNTGVRSMNNATTGLTTKDCWGR

Nucleotide


Download         Length: 402 bp        

>NTDB_id=478934 JZM58_RS25630 WP_039771691.1 5759373..5759774(-) (comF) [Pseudomonas fluorescens strain YK-310]
ATGCGCAGATCCAACCGAGGTTTCACCCTGATCGAAATCATGATCGTGATTGCGATCATCGGTATCGTTATCACCATCGG
CTATCCGAGCCTCACCGAATACGTGAAGAAGGGCCGCCGTGCCGACGTGGTCAGCAATTTGTCGGAACAGGCACAGATCC
TCGAACGCTTCTATTCGAAGAACAATGTCTACACCGGTGTCACCGGGTTGAGCACCGGCAACGATTTCTACACCATCACG
CCGACGATCACCGATCAGACCTTCCTGCTGACCGCGACCCGCAAGACGGGCACGGCCATGGCCACTGACAAGTGCGGGGA
TTTCACCCTCACCAACACCGGTGTCAGAAGCATGAACAACGCGACCACCGGGCTGACCACCAAGGATTGCTGGGGCCGCT
GA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

35.211

100

0.376