Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JQM62_RS16160 Genome accession   NZ_CP071711
Coordinates   3291447..3291914 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain EC20017429     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3286447..3296914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM62_RS16135 (JQM62_15985) rpsG 3286588..3287058 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JQM62_RS16140 (JQM62_15990) fusA 3287155..3289269 (+) 2115 WP_000124700.1 elongation factor G -
  JQM62_RS16145 (JQM62_15995) tuf 3289340..3290524 (+) 1185 WP_000031783.1 elongation factor Tu -
  JQM62_RS16150 (JQM62_16000) bfd 3290707..3290901 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JQM62_RS16155 (JQM62_16005) bfr 3290974..3291450 (+) 477 WP_000675515.1 bacterioferritin -
  JQM62_RS16160 (JQM62_16010) pilD 3291447..3291914 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  JQM62_RS16165 (JQM62_16015) rpsJ 3292293..3292604 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JQM62_RS16170 (JQM62_16020) rplC 3292637..3293266 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JQM62_RS16175 (JQM62_16025) rplD 3293277..3293882 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JQM62_RS16180 (JQM62_16030) rplW 3293879..3294181 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JQM62_RS16185 (JQM62_16035) rplB 3294199..3295020 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JQM62_RS16190 (JQM62_16040) rpsS 3295037..3295315 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JQM62_RS16195 (JQM62_16045) rplV 3295330..3295662 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JQM62_RS16200 (JQM62_16050) rpsC 3295680..3296381 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JQM62_RS16205 (JQM62_16055) rplP 3296394..3296804 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=478537 JQM62_RS16160 WP_000339836.1 3291447..3291914(-) (pilD) [Escherichia coli strain EC20017429]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=478537 JQM62_RS16160 WP_000339836.1 3291447..3291914(-) (pilD) [Escherichia coli strain EC20017429]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361