Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   IAQ69_RS09360 Genome accession   NZ_CP060811
Coordinates   1987928..1988554 (-) Length   208 a.a.
NCBI ID   WP_166139440.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982928..1993554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS09330 (IAQ69_09325) - 1983289..1983723 (-) 435 WP_180014273.1 SRPBCC family protein -
  IAQ69_RS09335 (IAQ69_09330) tadA 1983786..1984301 (-) 516 WP_125279021.1 tRNA adenosine(34) deaminase TadA -
  IAQ69_RS09340 (IAQ69_09335) - 1984308..1985429 (-) 1122 WP_200228761.1 enoyl-CoA hydratase/isomerase family protein -
  IAQ69_RS09345 (IAQ69_09340) ung 1985426..1986139 (-) 714 WP_004783992.1 uracil-DNA glycosylase -
  IAQ69_RS09350 (IAQ69_09345) - 1986185..1986781 (-) 597 WP_200228763.1 6-pyruvoyl trahydropterin synthase family protein -
  IAQ69_RS09355 (IAQ69_09350) gspK 1986942..1987913 (-) 972 WP_200228765.1 type II secretion system minor pseudopilin GspK -
  IAQ69_RS09360 (IAQ69_09355) xcpW 1987928..1988554 (-) 627 WP_166139440.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IAQ69_RS09365 (IAQ69_09360) gspI 1988551..1989135 (-) 585 WP_200228767.1 type II secretion system minor pseudopilin GspI -
  IAQ69_RS09370 (IAQ69_09365) - 1989125..1989673 (-) 549 WP_200228769.1 type II secretion system protein -
  IAQ69_RS09375 (IAQ69_09370) - 1989683..1990297 (-) 615 WP_125279027.1 TetR/AcrR family transcriptional regulator -
  IAQ69_RS09380 (IAQ69_09375) - 1990338..1991111 (-) 774 WP_125279028.1 TatD family hydrolase -
  IAQ69_RS09385 (IAQ69_09380) - 1991139..1991480 (-) 342 WP_005236142.1 PilZ domain-containing protein -
  IAQ69_RS09390 (IAQ69_09385) - 1991498..1992478 (-) 981 WP_200228771.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  IAQ69_RS09395 (IAQ69_09390) kdsB 1992493..1993254 (-) 762 WP_104425952.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23954.25 Da        Isoelectric Point: 4.7617

>NTDB_id=478536 IAQ69_RS09360 WP_166139440.1 1987928..1988554(-) (xcpW) [Acinetobacter variabilis strain XM9F202-2]
MKSKGFTLVELLVAIAIFAVLSALGWKVFDYIVQTKDRNAVHEQRLSQLQDTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERVEYQYRADEQKLYRLKYRNLNQTGRDQPESSVLLSEVEQFQIVVLNPNEMTQWPD
SSFDLNQIEQKQRLPKGIKINLMVNGVSYEWIFSLLNTDFLLETQKLT

Nucleotide


Download         Length: 627 bp        

>NTDB_id=478536 IAQ69_RS09360 WP_166139440.1 1987928..1988554(-) (xcpW) [Acinetobacter variabilis strain XM9F202-2]
ATGAAGTCTAAGGGATTTACGCTGGTCGAACTACTGGTTGCTATTGCTATTTTCGCCGTACTCTCTGCTCTAGGCTGGAA
AGTATTTGATTATATTGTACAAACCAAAGACCGTAATGCAGTGCATGAACAGCGCTTAAGTCAGTTGCAAGATACTTATC
AGCAGATCTTGCGTGATACGGTGCAGGCGGTGCCTTTAACGGCCAATATTAATGGTGATATTCAGCCGGCACTGGTTTTG
CAAAACGGACGTTTTAACTTTAGTAAGACTGGAGTCACCGATCCTCTGGAAGAGGGGATTTCTCCAGATGAACGGGTTGA
ATATCAGTACCGGGCAGATGAACAAAAACTCTATCGCCTGAAATACCGGAATTTAAACCAGACCGGGCGTGATCAACCTG
AATCCAGTGTGTTGTTGTCCGAGGTTGAGCAGTTTCAGATCGTAGTACTTAATCCAAATGAAATGACCCAATGGCCAGAC
TCATCTTTTGATTTAAATCAGATTGAGCAAAAACAGCGTTTACCCAAAGGCATTAAAATTAACTTAATGGTTAATGGGGT
CAGTTATGAGTGGATTTTCAGTTTATTGAATACAGATTTCCTGCTTGAAACCCAAAAGTTAACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

60.199

96.635

0.582