Detailed information NTG0478436

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: H9S87_RS11700
• Genome accession: NZ_CP060799
• Coordinates: 2319938..2322322 (-)
• Length: 794 a.a.
• NCBI ID: WP_060596861.1
• Uniprot ID: A0AAE3WIY5
• Organism: Bacillus pumilus strain ONU 554
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2314938..2327322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9S87_RS11665 (H9S87_11665)	-	2316001..2316729 (+)	729	WP_034661507.1	amino acid ABC transporter ATP-binding protein	-
H9S87_RS11670 (H9S87_11670)	-	2316743..2317552 (+)	810	WP_095285500.1	transporter substrate-binding domain-containing protein	-
H9S87_RS11675 (H9S87_11675)	-	2317633..2318286 (+)	654	WP_034661510.1	amino acid ABC transporter permease	-
H9S87_RS11680 (H9S87_11680)	-	2318302..2318952 (+)	651	WP_034661511.1	amino acid ABC transporter permease	-
H9S87_RS11685 (H9S87_11685)	-	2318988..2319119 (-)	132	WP_003216198.1	YrzQ family protein	-
H9S87_RS11690 (H9S87_11690)	-	2319140..2319331 (-)	192	WP_003216308.1	hypothetical protein	-
H9S87_RS11695 (H9S87_11695)	-	2319345..2319863 (-)	519	WP_045209900.1	PRC-barrel domain-containing protein	-
H9S87_RS11700 (H9S87_11700)	recD2	2319938..2322322 (-)	2385	WP_060596861.1	ATP-dependent RecD-like DNA helicase	Machinery gene
H9S87_RS11705 (H9S87_11705)	-	2322342..2322995 (-)	654	WP_034661516.1	lipopolysaccharide assembly protein LapB	-
H9S87_RS11710 (H9S87_11710)	mnmA	2323056..2324174 (-)	1119	WP_095285501.1	tRNA 2-thiouridine(34) synthase MnmA	-
H9S87_RS11715 (H9S87_11715)	-	2324270..2325412 (-)	1143	WP_095285502.1	cysteine desulfurase family protein	-
H9S87_RS11720 (H9S87_11720)	cymR	2325431..2325850 (-)	420	WP_012010726.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89036.55 Da
• Isoelectric Point: 5.2082

>NTDB_id=478436 H9S87_RS11700 WP_060596861.1 2319938..2322322(-) (recD2) [Bacillus pumilus strain ONU 554]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLMQTDEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=478436 H9S87_RS11700 WP_060596861.1 2319938..2322322(-) (recD2) [Bacillus pumilus strain ONU 554]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGCAAAGTCACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCCACTCATTTTCAAAAGGAAGTACCGACAACGAAGCAAGGAATCATTCATTATCTCTCAAGTGATTTATT
TGAGGGAATAGGGAAAAAGACGGCGGAAGAAATTGTGGGGCAGCTTGGCAATCAGACGCTTCATAAAATTATGCGTGACC
CAGCTGTTTTGTATGATGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCCGCAGCGCTCCAGGAACATCAAGGA
TTGGAACAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCTCAGCTCAGCATGAAGATATACCAAGTGTACGAGAG
TGAAACGCTGCAAAAGATTGAGGAAAACCCGTATCAGCTCGTCAAGGATGTCGAAGGGATCGGATTTATTAAGGCGGATG
AGCTTGGCGCTAGAACCGGCATCTCAGGAAATGACCCAGAGCGAATCCGTGCAGCCCTGCTTTATACAGTCGAAACAGCA
AGTCTTCAGGACGGTCATACGTACATACAAACGAAAGATTTGATCGTTGAAACCCGCAAGCTGCTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGATGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCACCCGTCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGGATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTCCCTGAATCGGAATTCCTGCTCGCACTTGGCGAGCTCGAGGAACGGCTGGGCGTCCAGTATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CGGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTAAC
CATTCACCGTTTGCTCGGCTGGAACGGATCAGAGGGCTTTTCGCATGATGAGGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTGGATATTTGGCTTGCGAATCACTTGTTTAAAGCGATTCCTGATCATATCCAAGTGATC
ATGGTAGGAGATGAACATCAGCTTCCATCTGTCGGACCAGGCCAAGTGTTAAGGGATTTACTTGCCTCACAAGCCGTACC
AGCTGTTACACTGACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGCG
TACTGCCAAAAGATATTACCGCACGTTCAAAGGACCGATCCTTCATAAAATGCTCAGCTGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCAAAAGACATTCAAGTGCTTGCGCCAATGTATAAAGGGAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAAAATAATATTTTTAACGGTGATATC
GGCGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGACATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACCTTTACAAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCACAAATCACAAGGCAGTGAAT
TCCCAATCGTTGTGCTGCCAGTCGTGAGAAGCTACTACAGAATGCTAAGGCGAAATCTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGCGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTGATGCAAACTGATGAAGTTATGGATGCGGAGCTTGCAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80	100	0.801