Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H9S87_RS07480 Genome accession   NZ_CP060799
Coordinates   1524648..1525427 (+) Length   259 a.a.
NCBI ID   WP_034662375.1    Uniprot ID   A0AAE3WK82
Organism   Bacillus pumilus strain ONU 554     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519648..1530427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9S87_RS07460 (H9S87_07460) trmFO 1520352..1521656 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H9S87_RS07465 (H9S87_07465) xerC 1521719..1522636 (+) 918 WP_060596252.1 tyrosine recombinase XerC -
  H9S87_RS07470 (H9S87_07470) hslV 1522651..1523196 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  H9S87_RS07475 (H9S87_07475) hslU 1523213..1524613 (+) 1401 WP_060596254.1 HslU--HslV peptidase ATPase subunit -
  H9S87_RS07480 (H9S87_07480) codY 1524648..1525427 (+) 780 WP_034662375.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H9S87_RS07485 (H9S87_07485) flgB 1525715..1526104 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  H9S87_RS07490 (H9S87_07490) flgC 1526104..1526556 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  H9S87_RS07495 (H9S87_07495) fliE 1526568..1526885 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  H9S87_RS07500 (H9S87_07500) fliF 1526935..1528527 (+) 1593 WP_034662370.1 flagellar basal-body MS-ring/collar protein FliF -
  H9S87_RS07505 (H9S87_07505) fliG 1528539..1529555 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  H9S87_RS07510 (H9S87_07510) fliH 1529548..1530312 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29019.22 Da        Isoelectric Point: 4.5971

>NTDB_id=478424 H9S87_RS07480 WP_034662375.1 1524648..1525427(+) (codY) [Bacillus pumilus strain ONU 554]
MALLQKTRIINSMLQDSAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKGE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=478424 H9S87_RS07480 WP_034662375.1 1524648..1525427(+) (codY) [Bacillus pumilus strain ONU 554]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATTCAGCAGGGAAACCAGTTAATTTTAAAGAAAT
GGCGGAAACACTGAGAGATGTCATTGATTCAAACATTTTTGTGTTGAGTAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCAATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCACTGATGATGATTTAATACTTGCTGAGTACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAAAAAGGAGAA
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTCCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGTGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475