Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   J1N58_RS10940 Genome accession   NZ_CP071697
Coordinates   2300594..2301172 (-) Length   192 a.a.
NCBI ID   WP_002939856.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 2295594..2306172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS10925 (J1N58_10925) - 2297065..2298006 (-) 942 WP_002939863.1 LacI family DNA-binding transcriptional regulator -
  J1N58_RS10930 (J1N58_10930) - 2298277..2300118 (-) 1842 WP_105096551.1 LPXTG cell wall anchor domain-containing protein -
  J1N58_RS10935 (J1N58_10935) - 2300297..2300581 (-) 285 Protein_2132 amino acid ABC transporter ATP-binding protein -
  J1N58_RS10940 (J1N58_10940) lytF 2300594..2301172 (-) 579 WP_002939856.1 CHAP domain-containing protein Regulator
  J1N58_RS10945 (J1N58_10945) leuS 2301440..2303941 (-) 2502 WP_207560366.1 leucine--tRNA ligase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20108.71 Da        Isoelectric Point: 6.4608

>NTDB_id=478424 J1N58_RS10940 WP_002939856.1 2300594..2301172(-) (lytF) [Streptococcus suis strain 1112S]
MSYQMIKKQFKLGLFTALIGNLLWSGMVNVSADDTVISDSPTVSALTKKVEAAKKAAKAAAAAKAALATNMVSEVAVEYT
ANTYPAGQCTWGAKEMAPWVGNYWGNGGDWAASATALGYEVGTIPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKESNY
GGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV

Nucleotide


Download         Length: 579 bp        

>NTDB_id=478424 J1N58_RS10940 WP_002939856.1 2300594..2301172(-) (lytF) [Streptococcus suis strain 1112S]
ATGAGTTATCAAATGATAAAAAAACAATTCAAATTGGGACTGTTTACAGCCCTCATAGGAAATCTTTTATGGTCGGGAAT
GGTGAATGTCAGTGCAGATGACACAGTTATAAGCGATAGTCCGACAGTATCAGCGTTAACAAAAAAGGTTGAAGCTGCAA
AAAAAGCAGCCAAAGCTGCTGCCGCTGCAAAGGCTGCTTTGGCTACCAATATGGTGTCAGAGGTTGCTGTGGAATATACG
GCTAATACCTATCCAGCGGGTCAGTGTACTTGGGGTGCCAAAGAAATGGCTCCTTGGGTTGGAAACTATTGGGGTAATGG
TGGAGATTGGGCAGCTAGTGCGACAGCGCTTGGATATGAAGTGGGAACTATTCCAAAAGTTGGCGCTATTGCTGTATGGA
CAGATGGAGGCTACGGTCATGTTGCCTATGTAACAGATGTGGCAGCTAACGGTCACATTCAAGTTAAGGAATCAAACTAT
GGTGGAGTATACTACCCAAGTAATGTCCGAGGTTTCTTTGATCCAACAACGACTAGTGAAGGAACAGTCAGCTATATTTA
CCCACCAGCTGGAGTATAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(81-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

65.741

56.25

0.37
  lytF Streptococcus gordonii str. Challis substr. CH1

65.741

56.25

0.37