Detailed information NTG0478347

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: J1N58_RS01180
• Genome accession: NZ_CP071697
• Coordinates: 231851..234343 (-)
• Length: 830 a.a.
• NCBI ID: WP_207560430.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 1112S
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 226851..239343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1N58_RS01150 (J1N58_01150)	-	226897..227526 (+)	630	WP_207560428.1	NAD(P)-dependent oxidoreductase	-
J1N58_RS01155 (J1N58_01155)	-	227623..228543 (+)	921	WP_207560429.1	PfkB family carbohydrate kinase	-
J1N58_RS01160 (J1N58_01160)	-	228550..228771 (-)	222	Protein_197	transposase	-
J1N58_RS11900 (J1N58_01165)	-	228764..229057 (+)	294	WP_024419590.1	LPXTG cell wall anchor domain-containing protein	-
J1N58_RS01170 (J1N58_01170)	-	229329..230636 (+)	1308	WP_105096877.1	LPXTG cell wall anchor domain-containing protein	-
J1N58_RS01175 (J1N58_01175)	-	231050..231745 (-)	696	WP_099870932.1	hypothetical protein	-
J1N58_RS01180 (J1N58_01180)	recD/recD2/recDB	231851..234343 (-)	2493	WP_207560430.1	ATP-dependent RecD-like DNA helicase	Machinery gene
J1N58_RS01185 (J1N58_01185)	lepB	234408..235037 (-)	630	WP_105119317.1	signal peptidase I	-
J1N58_RS01190 (J1N58_01190)	rnhC	235047..235937 (-)	891	WP_207560431.1	ribonuclease HIII	-
J1N58_RS01195 (J1N58_01195)	-	236022..237005 (+)	984	WP_207560432.1	Gfo/Idh/MocA family oxidoreductase	-
J1N58_RS01200 (J1N58_01200)	-	237234..238358 (+)	1125	WP_207560433.1	LysM domain-containing protein	-
J1N58_RS01205 (J1N58_01205)	-	238442..238804 (-)	363	WP_024378078.1	DUF1801 domain-containing protein	-

Sequence

Protein

• Length: 830 a.a.
• Molecular weight: 93255.48 Da
• Isoelectric Point: 4.6197

>NTDB_id=478347 J1N58_RS01180 WP_207560430.1 231851..234343(-) (recD/recD2/recDB) [Streptococcus suis strain 1112S]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSDHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFNPFPRADVEAA
IAELESMSSLTYDDVQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQEEMAEQDSKDTLAEKAENKTAATVQTHPPTQPDRKKQAEVVKENSQQLSLLDQDQPEKTSPQHT
EYILTVDKLLTIDPMIGINQADIEEFFTKK

Nucleotide

• Length: 2493 bp

>NTDB_id=478347 J1N58_RS01180 WP_207560430.1 231851..234343(-) (recD/recD2/recDB) [Streptococcus suis strain 1112S]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAAACTGACGCAGACTATGACGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAACAGCTGCAAATTTCGCGTTACGAACGTAGC
AAGCCTACCTCAGCTGGTCTGGTTAAGTATTTCTCCAGCGACCATTTCAAGGGAATTGGAAGAAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACTCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTCCAAATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAAGGCCTTGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCAGGCATGCTATTTAGCCTCATCCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGATCCTGCCGCAGTTGCCCACGA
GTTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACCAAGATTTTCGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAACCCCTTCCCACGCGCAGACGTCGAGGCTGCT
ATAGCAGAGCTGGAAAGCATGTCTTCTCTCACCTACGATGACGTTCAAAAAGAAGCCATTGTCCAAGCTATTACCAATCC
GCTTTTCATTCTGACAGGTGGACCTGGTACAGGCAAAACAACCGTCATCAACGGTATTATCGCAGTCTATGCCATCTTGC
ATAAGATTGACCTAACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGTCTGCCTTCCGCCACCATCCACCGCCACCTCGGTCTAGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTACTTGGATGCAGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCATCCCAGACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCCGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCCTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCAACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGAGCTCTGCCTAGCGATTTCCGCGAAAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCTCTGATTGAGCGTATTGTCGGCGCAGCCATCAAGTCGGGCATTCCTGCAAACGAAGTACAA
ATCCTCGCTCCCATGTACCGTGGTGCTGCAGGTATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAAGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTATATTACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAGATTACCTTGGCCTATGCCATGTC
CATCCACAAGTCCCAGGGCAGTGAGTTCCAAGTCGTCATCCTTCCCATCACGCGCACCAGCCACCGCATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTAGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCGTCCGCAAAACCTATCTGGTCCCACGTTTCCAAGAGGAAATGGCAGAGCAGGACAGCAAGGATAC
TTTGGCTGAAAAAGCTGAAAACAAAACAGCAGCAACCGTCCAAACCCATCCCCCTACTCAGCCAGACAGGAAAAAACAGG
CTGAAGTAGTCAAAGAAAACAGCCAACAACTCTCCCTTCTTGATCAAGACCAACCAGAAAAAACAAGTCCCCAACACACA
GAATACATTCTGACGGTGGACAAGCTACTAACCATCGATCCTATGATTGGTATAAACCAGGCAGATATTGAAGAATTTTT
CACTAAAAAGTAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

• AAA domain (AAA_30) (332-529)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.799	91.084	0.381