Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J3R87_RS12280 Genome accession   NZ_CP071594
Coordinates   2500165..2501439 (+) Length   424 a.a.
NCBI ID   WP_000102741.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PNID0137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2495165..2506439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R87_RS12250 (J3R87_12250) mnmA 2495369..2496487 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  J3R87_RS12255 (J3R87_12255) - 2496488..2497630 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  J3R87_RS12260 (J3R87_12260) - 2497940..2498953 (+) 1014 WP_000985898.1 LLM class flavin-dependent oxidoreductase -
  J3R87_RS12265 (J3R87_12265) - 2499190..2499336 (-) 147 WP_000008061.1 SAS049 family protein -
  J3R87_RS12270 (J3R87_12270) - 2499376..2499558 (-) 183 WP_000752909.1 CsbD family protein -
  J3R87_RS12275 (J3R87_12275) - 2499658..2500080 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  J3R87_RS12280 (J3R87_12280) rarA 2500165..2501439 (+) 1275 WP_000102741.1 replication-associated recombination protein A Machinery gene
  J3R87_RS12285 (J3R87_12285) - 2501600..2502373 (-) 774 WP_160200240.1 tRNA threonylcarbamoyladenosine dehydratase -
  J3R87_RS12290 (J3R87_12290) - 2502373..2502501 (-) 129 WP_001791215.1 hypothetical protein -
  J3R87_RS12300 (J3R87_12300) aspS 2502834..2504600 (-) 1767 WP_000044796.1 aspartate--tRNA ligase -
  J3R87_RS12305 (J3R87_12305) hisS 2504616..2505878 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47292.90 Da        Isoelectric Point: 8.6816

>NTDB_id=478310 J3R87_RS12280 WP_000102741.1 2500165..2501439(+) (rarA) [Staphylococcus aureus strain PNID0137]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSERQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=478310 J3R87_RS12280 WP_000102741.1 2500165..2501439(+) (rarA) [Staphylococcus aureus strain PNID0137]
GTGAGTACAGAACCATTAGCGTCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACACTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGCTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATTTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACGACAACTCAAAGAAATATATAACAATTTACTTAAACAAAGGCCATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686