Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   J3R87_RS09890 Genome accession   NZ_CP071594
Coordinates   2023930..2024703 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain PNID0137     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2018930..2029703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R87_RS09870 (J3R87_09870) trmFO 2019273..2020580 (+) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  J3R87_RS09875 (J3R87_09875) xerC 2020998..2021894 (+) 897 WP_213674469.1 tyrosine recombinase XerC -
  J3R87_RS09880 (J3R87_09880) hslV 2021891..2022436 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  J3R87_RS09885 (J3R87_09885) hslU 2022502..2023905 (+) 1404 WP_000379051.1 ATP-dependent protease ATPase subunit HslU -
  J3R87_RS09890 (J3R87_09890) codY 2023930..2024703 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  J3R87_RS09895 (J3R87_09895) - 2024754..2024846 (+) 93 WP_031788481.1 hypothetical protein -
  J3R87_RS09900 (J3R87_09900) rpsB 2025045..2025812 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  J3R87_RS09905 (J3R87_09905) - 2025846..2025959 (+) 114 WP_001791405.1 hypothetical protein -
  J3R87_RS09910 (J3R87_09910) tsf 2025994..2026875 (+) 882 WP_000201387.1 translation elongation factor Ts -
  J3R87_RS09915 (J3R87_09915) pyrH 2027012..2027734 (+) 723 WP_000057330.1 UMP kinase -
  J3R87_RS09920 (J3R87_09920) frr 2027753..2028307 (+) 555 WP_001280006.1 ribosome recycling factor -
  J3R87_RS09925 (J3R87_09925) - 2028680..2029450 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=478286 J3R87_RS09890 WP_000055337.1 2023930..2024703(+) (codY) [Staphylococcus aureus strain PNID0137]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=478286 J3R87_RS09890 WP_000055337.1 2023930..2024703(+) (codY) [Staphylococcus aureus strain PNID0137]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428