Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H9L01_RS04515 Genome accession   NZ_CP060715
Coordinates   921596..923353 (-) Length   585 a.a.
NCBI ID   WP_187534821.1    Uniprot ID   -
Organism   Erysipelothrix inopinata strain DSM 15511     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 916596..928353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L01_RS04500 (H9L01_04500) - 917325..919328 (+) 2004 WP_187534818.1 InlB B-repeat-containing protein -
  H9L01_RS04505 (H9L01_04505) - 919427..919684 (+) 258 WP_187534819.1 hypothetical protein -
  H9L01_RS04510 (H9L01_04510) - 919874..921553 (+) 1680 WP_187534820.1 Na/Pi cotransporter family protein -
  H9L01_RS04515 (H9L01_04515) rcrQ 921596..923353 (-) 1758 WP_187534821.1 ABC transporter ATP-binding protein Regulator
  H9L01_RS04520 (H9L01_04520) - 923334..925109 (-) 1776 WP_187534822.1 ABC transporter ATP-binding protein -
  H9L01_RS04525 (H9L01_04525) - 925106..925300 (-) 195 WP_187534823.1 hypothetical protein -
  H9L01_RS04530 (H9L01_04530) - 925438..925950 (+) 513 WP_187534824.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  H9L01_RS04535 (H9L01_04535) - 926005..926469 (-) 465 WP_187534825.1 hypothetical protein -
  H9L01_RS04540 (H9L01_04540) - 926466..927296 (-) 831 WP_187534826.1 hypothetical protein -
  H9L01_RS04545 (H9L01_04545) - 927306..927722 (-) 417 WP_187534827.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 65109.85 Da        Isoelectric Point: 4.8906

>NTDB_id=477987 H9L01_RS04515 WP_187534821.1 921596..923353(-) (rcrQ) [Erysipelothrix inopinata strain DSM 15511]
MKQQETKKFQGLTNLLSYSKRYKGSLITVGVLALTGAIFILLGPKQIETITNLIIEGMHTGIDLERISKVGMTLVIIYII
GFGINYAKQFIMASITQRLNNQLRTEIDQKINRLPLSYFDEVSYGDVLSRVTNDVDTIGKTLNNSIPTIVTSITLLVGSL
FMMVTSNLTLAIIIVTITLLGFTMVKLITKKSQPYFNKQQQVLGDMSGFVEEAYTGHTIIKVYNASDDINDEFSEINDKL
TNYGKKAHFLSGIMTPLISFIGNLSYVAVAIVGSKMVVSGSIEFGVVVAFTMYIRQFNNPLSQLTQVVTDLQTASAASIR
VRDFMNEDEIPTDTNSPEILDHVEGNINFDHVSFGYDPNKPIIKDFSCDVVAGQKIAIVGPTGAGKTTLVNLLMRFYDVT
SGDIKIDGTSIFNITKENLRNQFGMVLQDTWIFEGTVYENLVYSIPNINIDTVEKACERVGIDHFINSLPNGYDTVLDET
TSLSEGQKQQFTIVRAMLKNAPLLILDEATSSIDTRTELIIQNAMDELMKGRTSFVIAHRLSTIKDADLILVMKDGNVIE
SGTHDELLEQRTFYYNLYNSQFQTA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=477987 H9L01_RS04515 WP_187534821.1 921596..923353(-) (rcrQ) [Erysipelothrix inopinata strain DSM 15511]
ATGAAACAACAAGAAACTAAAAAATTTCAAGGACTTACCAATCTACTCTCTTACAGTAAGCGATATAAAGGTTCTCTTAT
TACTGTTGGGGTTCTAGCACTAACTGGTGCTATCTTTATTTTACTAGGACCTAAACAAATTGAAACTATCACCAATTTAA
TTATCGAAGGAATGCATACTGGCATTGACTTAGAAAGAATCAGTAAAGTAGGCATGACCCTGGTTATAATTTATATCATT
GGATTTGGAATAAACTACGCTAAGCAATTTATTATGGCTAGTATTACGCAACGTTTAAACAATCAACTCCGTACCGAAAT
AGATCAAAAAATTAACCGCCTACCCCTCTCATATTTTGATGAAGTTAGTTATGGTGATGTATTGAGTCGAGTTACGAACG
ATGTTGATACAATTGGTAAAACCCTAAACAACAGTATCCCAACAATCGTAACAAGTATCACTTTATTGGTTGGCTCACTC
TTCATGATGGTTACTTCAAATCTTACCCTTGCAATTATTATCGTTACCATTACACTTCTTGGCTTCACAATGGTTAAACT
GATTACAAAAAAATCTCAGCCTTACTTTAACAAACAACAACAAGTTTTAGGGGATATGAGTGGTTTTGTAGAAGAAGCCT
ATACCGGCCATACTATTATTAAAGTGTATAATGCAAGTGATGATATCAATGATGAATTTTCAGAAATCAATGATAAATTA
ACAAACTATGGAAAGAAAGCACACTTCCTTTCGGGTATTATGACGCCTCTGATCAGTTTCATTGGAAATCTTAGTTACGT
TGCAGTCGCAATTGTAGGATCAAAAATGGTTGTAAGTGGATCCATTGAATTTGGTGTAGTAGTTGCCTTTACAATGTATA
TTCGTCAGTTTAACAACCCACTATCACAACTTACTCAAGTTGTTACAGATTTACAAACTGCTTCTGCAGCATCAATTCGC
GTTCGAGACTTTATGAATGAAGATGAAATTCCTACGGATACTAATTCTCCTGAAATTCTTGACCATGTTGAAGGGAATAT
CAATTTCGATCATGTATCATTTGGATATGATCCTAATAAACCAATTATAAAGGATTTCTCGTGTGATGTTGTTGCGGGAC
AAAAAATTGCGATTGTAGGTCCTACAGGTGCAGGTAAGACAACCCTTGTTAACTTACTGATGCGATTTTACGATGTAACA
TCAGGTGATATTAAAATTGATGGTACGTCAATCTTTAATATCACGAAAGAAAATCTAAGAAATCAGTTTGGTATGGTATT
ACAAGATACATGGATTTTTGAAGGTACCGTTTATGAGAATTTAGTTTATTCGATCCCAAACATTAATATTGATACGGTTG
AGAAAGCCTGTGAGCGGGTTGGAATTGACCATTTCATTAACAGTTTACCCAATGGTTATGACACAGTTTTAGATGAGACA
ACATCTTTGTCAGAAGGACAAAAACAACAATTTACGATTGTGAGAGCCATGTTAAAAAATGCACCCCTACTTATCCTTGA
TGAAGCAACAAGCTCCATCGATACACGTACGGAACTAATTATTCAAAATGCCATGGATGAACTCATGAAAGGACGTACAA
GCTTTGTGATTGCCCATCGCCTTTCTACCATAAAAGATGCCGATTTAATTCTTGTTATGAAAGATGGTAATGTAATTGAA
AGTGGAACTCACGATGAGCTCCTAGAACAAAGAACATTCTACTATAACTTGTATAATAGCCAATTTCAAACTGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(27-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.519

98.803

0.499