Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H9Q20_RS04200 Genome accession   NZ_CP060698
Coordinates   920027..920674 (+) Length   215 a.a.
NCBI ID   WP_124642356.1    Uniprot ID   -
Organism   Amniculibacterium sp. G2-70     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 915027..925674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q20_RS04170 - 915477..916205 (+) 729 WP_124642366.1 pirin family protein -
  H9Q20_RS04175 - 916220..916780 (+) 561 WP_187478362.1 NADPH-dependent FMN reductase -
  H9Q20_RS04180 aqpZ 916948..917682 (+) 735 WP_187478363.1 aquaporin Z -
  H9Q20_RS04185 - 917739..918725 (-) 987 WP_124642362.1 acyl transferase -
  H9Q20_RS04190 - 918729..919496 (-) 768 WP_124642360.1 UDP-2,3-diacylglucosamine diphosphatase -
  H9Q20_RS04195 - 919531..919977 (-) 447 WP_124642358.1 6-pyruvoyl trahydropterin synthase family protein -
  H9Q20_RS04200 comF 920027..920674 (+) 648 WP_124642356.1 ComF family protein Machinery gene
  H9Q20_RS04205 upp 920676..921326 (-) 651 WP_124642354.1 uracil phosphoribosyltransferase -
  H9Q20_RS04210 der 921417..922727 (-) 1311 WP_124642352.1 ribosome biogenesis GTPase Der -
  H9Q20_RS04215 - 922880..923284 (+) 405 WP_187478364.1 thiol-disulfide oxidoreductase DCC family protein -
  H9Q20_RS04220 - 923339..923638 (-) 300 WP_241154768.1 c-type cytochrome -
  H9Q20_RS04225 - 923914..924423 (+) 510 WP_124642345.1 c-type cytochrome -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25238.08 Da        Isoelectric Point: 8.3596

>NTDB_id=477765 H9Q20_RS04200 WP_124642356.1 920027..920674(+) (comF) [Amniculibacterium sp. G2-70]
MILDILFPNRCLHCNLIIDGKDLLCEGCFYQIPFTHHRFGEENDLSKRCRTHFPIENSFALMNFEQGNLAQKIIHQLKYA
DKEYFGKHIAQWTFDRLEFLQKPDLLVSVPLHPKKQKKRGYNQLHLFAKTLSEHYGIPLENDLLKRNFYNQAQAKKDRNH
RTEVDRLFSVTQKIENQHILLVDDVLTTGNTLSAIAWEFLKNSNNKISVLVMALD

Nucleotide


Download         Length: 648 bp        

>NTDB_id=477765 H9Q20_RS04200 WP_124642356.1 920027..920674(+) (comF) [Amniculibacterium sp. G2-70]
ATGATTTTGGACATTCTTTTCCCCAACCGTTGCCTGCATTGCAATCTGATTATTGATGGCAAAGACTTGTTGTGCGAAGG
GTGCTTTTATCAAATCCCATTTACCCATCATCGGTTTGGAGAAGAAAATGATCTTTCTAAAAGATGCAGAACCCACTTCC
CTATCGAAAATTCTTTTGCTTTGATGAATTTTGAACAAGGCAATCTTGCGCAAAAAATCATTCATCAATTGAAATATGCA
GATAAGGAATATTTTGGAAAACACATTGCCCAATGGACTTTTGATCGTTTAGAATTTCTACAAAAACCGGACTTATTGGT
TAGTGTCCCGCTACATCCTAAGAAACAAAAGAAAAGAGGCTACAACCAACTTCATCTTTTTGCCAAAACCCTATCCGAAC
ATTATGGAATCCCGTTGGAGAATGATTTATTGAAAAGAAATTTCTACAACCAAGCTCAAGCCAAAAAAGATAGAAATCAC
AGAACGGAAGTGGATCGTTTGTTTTCAGTAACCCAAAAAATTGAAAACCAACACATTCTATTAGTCGATGATGTCCTAAC
CACTGGAAATACACTTTCTGCGATCGCTTGGGAATTTCTAAAAAATTCCAACAATAAAATTTCGGTTTTGGTAATGGCTT
TGGATTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-36)

Phosphoribosyl transferase domain (Pribosyltran)

(127-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

49.074

100

0.493