Detailed information NTG0477316

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: J1G54_RS03340
• Genome accession: NZ_CP071491
• Coordinates: 601996..603339 (+)
• Length: 447 a.a.
• NCBI ID: WP_207342907.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain GHP1807
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 596996..608339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1G54_RS03320 (J1G54_03320)	pntA	597506..599038 (-)	1533	WP_021114578.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	-
J1G54_RS03325 (J1G54_03325)	-	599315..600367 (+)	1053	WP_005710531.1	rod shape-determining protein	-
J1G54_RS03330 (J1G54_03330)	mreC	600459..601508 (+)	1050	WP_075630474.1	rod shape-determining protein MreC	-
J1G54_RS03335 (J1G54_03335)	mreD	601508..601996 (+)	489	WP_005710534.1	rod shape-determining protein MreD	-
J1G54_RS03340 (J1G54_03340)	rarA	601996..603339 (+)	1344	WP_207342907.1	replication-associated recombination protein A	Machinery gene
J1G54_RS03345 (J1G54_03345)	-	603342..604802 (-)	1461	WP_075630472.1	porin family protein	-
J1G54_RS03350 (J1G54_03350)	-	605119..605742 (+)	624	WP_234925359.1	energy transducer TonB	-
J1G54_RS03355 (J1G54_03355)	-	605760..606428 (+)	669	WP_075604796.1	MotA/TolQ/ExbB proton channel family protein	-
J1G54_RS03360 (J1G54_03360)	-	606428..606838 (+)	411	WP_021114581.1	ExbD/TolR family protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50110.06 Da
• Isoelectric Point: 6.7052

>NTDB_id=477316 J1G54_RS03340 WP_207342907.1 601996..603339(+) (rarA) [Glaesserella parasuis strain GHP1807]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIAEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIRDAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAKQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTSLMKSLGYGEEYRYAHDEPNAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLKGLDLQSEVQRYNKQ

Nucleotide

• Length: 1344 bp

>NTDB_id=477316 J1G54_RS03340 WP_207342907.1 601996..603339(+) (rarA) [Glaesserella parasuis strain GHP1807]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTCTAGCTGAATA
TGTCGGACAATCACACCTGATCGCCGAAGGCAAACCCCTTCGCCGAGCCATTGAAGCAGGACATAGCCACTCAATGATTT
TCTGGGGTCCCCCAGGAACAGGCAAAACCACCCTTGCAGAAATTATCGCAAACGAACTTGATGCCGAAGTTGAACGCCTA
TCCGCCGTCACCAGCGGTATCAAAGAGATCCGAGATGCCATCGAAAAAGCCAAACTCAACCGACAATCTGGCAGACGCAC
GTTACTTTTTGTTGATGAAGTTCACCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCAACCACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTATCAAGGGCAAGGATTTACATT
CTCAAGCCACTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGACAAAGAGCGTGGACTAGGCAATGA
AAAACTTATCATTCAAGATGATGTGCTTCAACTGCTGGCGGACTACGTCAATGGCGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAAAACAATTACCACAAGGAAAATTGCTGGATAAAGCCTTGCTCACCGAGGTGTTGGGC
GAACGCCAAGCCCGTTTTGACAAAGGTGGCGACCGCTATTACGACCTGATTTCCGCCTTACATAAATCCATTCGAGGCTC
TTCCCCTGACGGTGCATTGTACTGGTATGCTCGTATTTTAACCGCTGGTGGCGATCCACTGTATGTTGCTCGCCGACTAC
TTGCGATAGCCTCAGAAGATATAGGCAATGCCGACCCAAGGGCAATGCAAGTCGCCCTTGCAGCGTGGGATTGTTATACC
AGAGTAGGGGCTTACGAAGGCGAACGGGCTATCGCTCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCCAAACGCCTAGCTCAAGAAGGCAAGGATTACGATGTTCCCGAACATCTGCGAAACGCAC
CGACTAGCTTAATGAAATCCTTAGGCTACGGCGAAGAATACCGCTACGCCCACGACGAACCTAACGCCTACGCCGCAGGG
GAAAACTACTTCCCCCCTGAACTGAAAGACACCCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAAAGGATTAGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (19-143)

• MgsA AAA+ ATPase C terminal (MgsA_C) (266-432)

• AAA C-terminal domain (AAA_assoc_2) (186-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40	91.723	0.367