Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J1G50_RS08170 Genome accession   NZ_CP071489
Coordinates   1660838..1662181 (-) Length   447 a.a.
NCBI ID   WP_082259155.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655838..1667181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS08150 (J1G50_08150) - 1657350..1657760 (-) 411 WP_021110459.1 ExbD/TolR family protein -
  J1G50_RS08155 (J1G50_08155) - 1657760..1658428 (-) 669 WP_021110458.1 MotA/TolQ/ExbB proton channel family protein -
  J1G50_RS08160 (J1G50_08160) - 1658446..1659069 (-) 624 WP_234923582.1 energy transducer TonB -
  J1G50_RS08165 (J1G50_08165) - 1659375..1660835 (+) 1461 WP_160405215.1 surface lipoprotein assembly modifier -
  J1G50_RS08170 (J1G50_08170) rarA 1660838..1662181 (-) 1344 WP_082259155.1 replication-associated recombination protein A Machinery gene
  J1G50_RS08175 (J1G50_08175) mreD 1662181..1662669 (-) 489 WP_016528285.1 rod shape-determining protein MreD -
  J1G50_RS08180 (J1G50_08180) mreC 1662669..1663718 (-) 1050 WP_005710533.1 rod shape-determining protein MreC -
  J1G50_RS08185 (J1G50_08185) - 1663810..1664862 (-) 1053 WP_005710531.1 rod shape-determining protein -
  J1G50_RS08190 (J1G50_08190) pntA 1665139..1666671 (+) 1533 WP_160405213.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50147.04 Da        Isoelectric Point: 6.4286

>NTDB_id=477235 J1G50_RS08170 WP_082259155.1 1660838..1662181(-) (rarA) [Glaesserella parasuis strain YHP1815]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTNLMKSLGYGEEYRYAHDEPHAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLKGLDLQSEVQRYNKQ

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=477235 J1G50_RS08170 WP_082259155.1 1660838..1662181(-) (rarA) [Glaesserella parasuis strain YHP1815]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTCTAGCTGAATA
TGTCGGACAATCACACCTGATCGGCGAAGGCAAACCCCTTCGCCGAGCCATTGAAGCAGGACATAGCCACTCAATGATTT
TCTGGGGTCCCCCAGGAACAGGCAAAACCACTCTTGCTGAAATTATCGCAAATGAACTTGATGCCGAAGTTGAACGTCTA
TCAGCTGTTACTAGCGGTATCAAAGAGATCCGAGAAGCCATCGAAAAAGCCAAACTCAACCGACAATCTGGCAGACGCAC
GTTACTTTTTGTTGATGAAGTTCACCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCATATTGAAGACGGCACCA
TTATTTTTATTGGTGCAACCACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTATCAAGGGCAAGAATTTACATT
CTCAAGCCACTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGACAAAGAGCGTGGACTAGGCAATGA
AAAACTTATCATTCAAGATGATGTGCTTCAACTACTGGCGGACTACGTCAATGGCGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAGAACAATTACCACAAGGAAAATTGCTGGATAAAGCCTTGCTCACCGAGGTGTTGGGC
GAACGCCAAGCTCGTTTTGACAAAGGTGGCGACCGCTATTACGACCTGATTTCTGCCTTACATAAATCCATTCGAGGCTC
TTCCCCTGACGGTGCATTATACTGGTATGCTCGTATTTTAACCGCTGGTGGCGATCCACTGTATGTCGCTCGCCGACTAC
TTGCGATAGCTTCAGAAGATGTCGGCAATGCCGACCCAAGAGCAATGCAAGTCGCCCTTGCAGCGTGGGATTGTTATACT
CGAGTGGGGGCTTACGAAGGCGAACGAGCCATCGCCCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCTAAACGCCTAGCCCAAGAAGGCAAAGATTACGACGTTCCCGAACATCTGCGTAATGCAC
CGACTAACCTAATGAAATCCTTAGGCTACGGAGAAGAATACCGCTACGCTCACGACGAACCTCACGCCTACGCAGCAGGG
GAAAACTACTTCCCCCCTGAACTGAAAGACACTCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAAAGGGTTGGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

AAA C-terminal domain (AAA_assoc_2)

(186-265)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.467

92.394

0.365