Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   J1G47_RS10200 Genome accession   NZ_CP071487
Coordinates   2016401..2017744 (+) Length   447 a.a.
NCBI ID   WP_207326620.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2011401..2022744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS10180 (J1G47_10180) pntA 2011911..2013443 (-) 1533 WP_021114578.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha -
  J1G47_RS10185 (J1G47_10185) - 2013720..2014772 (+) 1053 WP_005710531.1 rod shape-determining protein -
  J1G47_RS10190 (J1G47_10190) mreC 2014864..2015913 (+) 1050 WP_005710533.1 rod shape-determining protein MreC -
  J1G47_RS10195 (J1G47_10195) mreD 2015913..2016401 (+) 489 WP_005710534.1 rod shape-determining protein MreD -
  J1G47_RS10200 (J1G47_10200) rarA 2016401..2017744 (+) 1344 WP_207326620.1 replication-associated recombination protein A Machinery gene
  J1G47_RS10205 (J1G47_10205) - 2017747..2019207 (-) 1461 WP_038514427.1 surface lipoprotein assembly modifier -
  J1G47_RS10210 (J1G47_10210) - 2019380..2020147 (+) 768 WP_160428058.1 energy transducer TonB -
  J1G47_RS10215 (J1G47_10215) - 2020165..2020833 (+) 669 WP_010785999.1 MotA/TolQ/ExbB proton channel family protein -
  J1G47_RS10220 (J1G47_10220) - 2020833..2021243 (+) 411 WP_021110459.1 biopolymer transporter ExbD -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50159.05 Da        Isoelectric Point: 6.3274

>NTDB_id=477179 J1G47_RS10200 WP_207326620.1 2016401..2017744(+) (rarA) [Glaesserella parasuis strain YHP1818]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQFALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTSLMKSLGYGEEYRYAHDEPNAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLKGLDLQSEVQRYNKQ

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=477179 J1G47_RS10200 WP_207326620.1 2016401..2017744(+) (rarA) [Glaesserella parasuis strain YHP1818]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTCTAGCTGAATA
TGTCGGACAATCACACCTGATCGGCGAAGGCAAACCCCTTCGCCGAGCCATTGAAGCAGGACATAGCCACTCAATGATTT
TCTGGGGTCCCCCAGGAACAGGCAAAACCACTCTTGCTGAAATTATCGCAAATGAACTTGATGCCGAAGTTGAACGTCTA
TCAGCTGTTACTAGCGGTATCAAAGAGATCCGAGAAGCCATCGAAAAAGCCAAACTCAACCGACAATCTGGCAGACGCAC
GTTACTTTTTGTTGATGAAGTTCACCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCAACCACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTATCAAGGGCAAGGATTTACATT
CTCAAGCCACTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGACAAAGAACGTGGATTAGGCAATGA
AAAGCTCATCATTCAAGATGATGTGCTTCAACTGCTGGCGGACTACGTCAATGGCGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAGAACAATTACCACAAGGAAAATTGCTGGATAAAGCCTTGCTCACCGAAGTGTTGGGC
GAACGCCAAGCCCGTTTTGACAAAGGTGGCGACCGCTATTACGACCTGATTTCCGCCTTACATAAATCCATTCGAGGCTC
TTCCCCTGACGGTGCATTGTACTGGTATGCTCGTATTTTAACCGCTGGAGGCGATCCACTGTATGTTGCTCGCCGACTAC
TTGCGATAGCCTCAGAAGATATAGGCAATGCCGATCCAAGGGCAATGCAATTCGCCCTTGCTGCGTGGGATTGTTATACC
AGAGTAGGGGCTTACGAAGGCGAACGGGCTATCGCTCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCCAAACGCCTAGCTCAAGAAGGCAAGGATTACGATGTTCCCGAACATCTGCGAAACGCAC
CGACTAGCTTAATGAAATCCTTAGGCTACGGCGAAGAATACCGCTACGCCCACGACGAACCTAACGCCTACGCCGCAGGG
GAAAACTACTTCCCCCCTGAACTGAAAGACACCCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAAAGGATTAGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.512

91.723

0.362