Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H9Q78_RS00275 Genome accession   NZ_CP060634
Coordinates   62558..64411 (+) Length   617 a.a.
NCBI ID   WP_249302831.1    Uniprot ID   -
Organism   Qiania dongpingensis strain NSJ-38     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 57558..69411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q78_RS00260 (H9Q78_00260) - 58542..59489 (-) 948 WP_249302825.1 LysR family transcriptional regulator -
  H9Q78_RS00265 (H9Q78_00265) - 59719..60315 (+) 597 WP_249302827.1 MarR family winged helix-turn-helix transcriptional regulator -
  H9Q78_RS00270 (H9Q78_00270) - 60340..62565 (+) 2226 WP_249302829.1 ABC transporter ATP-binding protein -
  H9Q78_RS00275 (H9Q78_00275) rcrQ 62558..64411 (+) 1854 WP_249302831.1 ABC transporter ATP-binding protein Regulator
  H9Q78_RS00280 (H9Q78_00280) - 64431..65051 (-) 621 WP_249302833.1 DUF4397 domain-containing protein -
  H9Q78_RS00285 (H9Q78_00285) fba 65285..66226 (+) 942 WP_249302835.1 class II fructose-1,6-bisphosphate aldolase -
  H9Q78_RS00290 (H9Q78_00290) cbiD 66457..67599 (+) 1143 WP_249302837.1 cobalt-precorrin-5B (C(1))-methyltransferase CbiD -
  H9Q78_RS00295 (H9Q78_00295) - 67615..67938 (+) 324 WP_249302838.1 hypothetical protein -
  H9Q78_RS00300 (H9Q78_00300) cobI 67928..68626 (+) 699 WP_330595199.1 precorrin-2 C(20)-methyltransferase -
  H9Q78_RS00305 (H9Q78_00305) cobM 68619..69374 (+) 756 WP_249302840.1 precorrin-4 C(11)-methyltransferase -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68365.91 Da        Isoelectric Point: 6.6505

>NTDB_id=476860 H9Q78_RS00275 WP_249302831.1 62558..64411(+) (rcrQ) [Qiania dongpingensis strain NSJ-38]
MSNETGKNPGKVRMGGRMGHGPMGAGEKAKDFKKTMKKLLAYMGRYKWGILTVLIFAVGSTIFTVIGPKILGKATTKIFN
GLTGKLSGGAGIDFSGIGRILLILLGLYVISAFFSFIQGLVMTSISQKVSFRMRREMSEKINRLPMNYYDTRTHGEVLSR
VTNDVDTLGQSLNQSITQLITSVATIIGVLVMMLSISPLMTIIALLILPISMLLISFIVKHSQKFFSQQQEYLGHVNGQV
EETYGGHTVVKVFNREEAVLEEFNDTNETLYQSAWKSQFFSGMMQPIMQFVGNLGYVAVAIVGGFLTIRGTIEVGDIQSF
IQYVRTFTQPITQIAQVSNLLQSTAAAAERVFEFLEEEEEDQVVENPVSIEGIEGNVTFDHVKFGYRPDKIIIGDFSAEI
SAGRKIAIVGPTGAGKTTLVKLLMRFYDVSGGSIKIDGHDIRSFNRSELRELFGMVLQDTWLFKGSIMENIRYGNLDATD
EEVIAAAKAAHAHHFISTLPEGYNMELNEEANNVSQGQKQLLTIARAILADNKILILDEATSSVDTRTEERIQKAMDNLM
KGRTSFIIAHRLSTIRDADLILVMKDGDIIEQGTHEELLAKKGFYADLYNSQFEKTA

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=476860 H9Q78_RS00275 WP_249302831.1 62558..64411(+) (rcrQ) [Qiania dongpingensis strain NSJ-38]
ATGAGTAATGAGACAGGAAAGAATCCGGGGAAGGTGCGTATGGGCGGCCGTATGGGACACGGGCCCATGGGCGCAGGTGA
GAAAGCGAAAGATTTTAAAAAGACCATGAAGAAGCTTTTGGCTTATATGGGACGTTATAAATGGGGAATCTTGACGGTGC
TCATTTTTGCCGTCGGCAGTACCATATTCACTGTGATCGGGCCGAAAATCTTGGGGAAAGCAACGACTAAGATTTTCAAT
GGCCTCACTGGGAAGCTGAGCGGAGGAGCCGGAATTGACTTTTCCGGCATTGGAAGGATACTTCTGATCCTGCTTGGGTT
ATATGTGATCAGTGCCTTTTTCAGCTTTATCCAGGGCCTGGTGATGACCTCCATTTCACAGAAGGTAAGCTTCCGGATGA
GGCGGGAGATGTCTGAGAAGATAAACCGTCTGCCCATGAATTATTATGATACAAGGACACACGGAGAAGTGCTTTCCCGG
GTGACGAATGATGTCGATACGCTCGGGCAGAGCCTGAACCAGAGCATTACGCAGCTGATCACATCAGTGGCGACCATTAT
CGGCGTCCTGGTCATGATGCTCAGCATAAGCCCGCTCATGACTATCATCGCACTGCTGATCCTTCCCATTTCCATGCTGC
TGATTTCCTTCATTGTGAAGCATTCACAGAAGTTCTTCAGCCAGCAGCAGGAATATCTGGGCCATGTGAATGGGCAGGTG
GAGGAAACCTACGGCGGCCATACGGTAGTGAAGGTGTTCAACCGGGAAGAGGCTGTCCTGGAAGAATTTAACGATACCAA
TGAAACCTTGTACCAATCGGCATGGAAGTCCCAGTTCTTTTCCGGGATGATGCAGCCGATCATGCAGTTTGTGGGAAATC
TGGGATACGTGGCCGTGGCAATCGTGGGCGGTTTCCTGACCATCCGCGGGACCATAGAAGTCGGCGATATCCAGTCCTTC
ATTCAGTATGTGAGGACCTTCACACAGCCGATCACTCAGATCGCTCAGGTATCCAATTTGCTCCAGTCGACGGCAGCAGC
GGCAGAACGTGTCTTTGAATTTCTTGAAGAGGAGGAAGAAGATCAGGTCGTGGAGAATCCCGTATCCATCGAAGGGATTG
AGGGAAATGTGACCTTTGACCATGTGAAATTTGGCTATCGCCCCGACAAGATCATCATAGGAGATTTCAGCGCGGAGATA
TCGGCGGGCAGAAAAATCGCCATTGTCGGACCTACCGGTGCGGGGAAGACAACGCTTGTTAAGCTGCTCATGCGTTTTTA
TGATGTAAGCGGCGGCTCCATAAAGATTGACGGCCATGATATCCGTTCCTTTAACAGAAGCGAGCTCCGGGAGCTTTTCG
GAATGGTCCTTCAGGATACCTGGCTGTTTAAAGGCTCCATTATGGAAAATATTCGGTACGGGAATCTGGATGCCACTGAC
GAAGAGGTCATAGCCGCAGCTAAGGCAGCTCACGCTCATCATTTCATTTCCACACTGCCGGAAGGGTATAATATGGAGTT
AAACGAGGAGGCGAACAATGTCTCCCAGGGGCAGAAGCAGCTGCTGACCATAGCGCGCGCGATCCTTGCGGACAATAAGA
TACTGATTTTAGACGAAGCCACCAGTTCCGTGGATACGAGAACGGAAGAGAGAATTCAGAAAGCTATGGACAATTTGATG
AAGGGGCGTACCAGCTTCATCATCGCCCACCGGCTTTCCACCATCCGAGACGCCGATTTGATCCTCGTCATGAAGGACGG
GGACATCATCGAGCAGGGTACCCACGAAGAGCTGCTGGCGAAGAAGGGATTCTACGCGGATCTTTACAACAGCCAGTTTG
AGAAAACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(395-542)

ABC transporter transmembrane region (ABC_membrane)

(51-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.151

94.165

0.491