Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JZY07_RS05855 Genome accession   NZ_CP071305
Coordinates   1170936..1172744 (-) Length   602 a.a.
NCBI ID   WP_024412076.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165936..1177744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS05835 (JZY07_05835) murB 1166494..1167399 (-) 906 WP_024399121.1 UDP-N-acetylmuramate dehydrogenase -
  JZY07_RS05840 (JZY07_05840) thrB 1167634..1168494 (-) 861 WP_024412079.1 homoserine kinase -
  JZY07_RS05845 (JZY07_05845) - 1168498..1169783 (-) 1286 Protein_1120 homoserine dehydrogenase -
  JZY07_RS05850 (JZY07_05850) - 1169888..1170811 (+) 924 WP_024412077.1 polysaccharide deacetylase family protein -
  JZY07_RS05855 (JZY07_05855) rcrQ 1170936..1172744 (-) 1809 WP_024412076.1 ABC transporter ATP-binding protein Regulator
  JZY07_RS05860 (JZY07_05860) - 1172753..1174488 (-) 1736 Protein_1123 ABC transporter ATP-binding protein -
  JZY07_RS05865 (JZY07_05865) - 1174564..1174806 (-) 243 WP_012028079.1 KH domain-containing protein -
  JZY07_RS05870 (JZY07_05870) rpsP 1174828..1175100 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  JZY07_RS05875 (JZY07_05875) - 1175225..1175533 (-) 309 WP_023370447.1 DUF4298 domain-containing protein -
  JZY07_RS05880 (JZY07_05880) pcp 1175533..1176180 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  JZY07_RS05885 (JZY07_05885) - 1176177..1176938 (-) 762 WP_032501780.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67185.32 Da        Isoelectric Point: 5.7620

>NTDB_id=476697 JZY07_RS05855 WP_024412076.1 1170936..1172744(-) (rcrQ) [Streptococcus suis strain SC183]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTAGLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGSIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLHFGRLDATDEEIVEAAKTANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSQSNTLRKSKADVVDSL

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=476697 JZY07_RS05855 WP_024412076.1 1170936..1172744(-) (rcrQ) [Streptococcus suis strain SC183]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTACGTCGTTACAAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTACAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCACTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTCTCAAATAT
CGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTACAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGG
ACAAGTCAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGACCAACAGGAGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTTCTATCAAAGTGGATGGTCAGGACATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCATTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAACTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACTATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCAATGAAACGCTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTCA
ATCTAATACTCTTCGAAAATCAAAAGCAGACGTTGTTGACTCGCTTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.22

98.007

0.424