Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HUG14_RS04340 Genome accession   NZ_CP060580
Coordinates   879311..880099 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 874311..885099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS04315 (HUG14_04315) - 874679..875470 (+) 792 WP_033899177.1 DNA/RNA non-specific endonuclease -
  HUG14_RS04320 (HUG14_04320) - 875635..875844 (+) 210 WP_010905160.1 hypothetical protein -
  HUG14_RS04325 (HUG14_04325) - 875856..876095 (+) 240 WP_003129719.1 hypothetical protein -
  HUG14_RS04330 (HUG14_04330) - 876292..877875 (+) 1584 WP_033899174.1 APC family permease -
  HUG14_RS04335 (HUG14_04335) - 877944..879158 (+) 1215 WP_187398504.1 pyridoxal phosphate-dependent aminotransferase -
  HUG14_RS04340 (HUG14_04340) codY 879311..880099 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HUG14_RS04345 (HUG14_04345) gatC 880661..880966 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HUG14_RS04350 (HUG14_04350) gatA 880966..882426 (+) 1461 WP_031559095.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  HUG14_RS04355 (HUG14_04355) - 882430..883032 (+) 603 WP_058202908.1 NUDIX hydrolase N-terminal domain-containing protein -
  HUG14_RS04360 (HUG14_04360) gatB 883072..884505 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=476651 HUG14_RS04340 WP_003129722.1 879311..880099(+) (codY) [Lactococcus lactis strain K_LL005]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=476651 HUG14_RS04340 WP_003129722.1 879311..880099(+) (codY) [Lactococcus lactis strain K_LL005]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462