Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   HUG14_RS02395 Genome accession   NZ_CP060580
Coordinates   492113..493051 (-) Length   312 a.a.
NCBI ID   WP_187398479.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 487113..498051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS02370 (HUG14_02370) frr 487231..487788 (-) 558 WP_004254618.1 ribosome recycling factor -
  HUG14_RS02375 (HUG14_02375) pyrH 488000..488716 (-) 717 WP_021464089.1 UMP kinase -
  HUG14_RS02380 (HUG14_02380) - 488801..489253 (-) 453 WP_021464090.1 hypothetical protein -
  HUG14_RS02385 (HUG14_02385) - 489387..490574 (-) 1188 WP_015427114.1 acetate kinase -
  HUG14_RS02390 (HUG14_02390) - 490731..491918 (-) 1188 WP_004254593.1 acetate kinase -
  HUG14_RS02395 (HUG14_02395) comYH 492113..493051 (-) 939 WP_187398479.1 class I SAM-dependent methyltransferase Machinery gene
  HUG14_RS02400 (HUG14_02400) - 493143..493394 (-) 252 WP_004254583.1 DUF3165 family protein -
  HUG14_RS02405 (HUG14_02405) typA 493495..495327 (-) 1833 WP_025016832.1 translational GTPase TypA -
  HUG14_RS11805 (HUG14_02410) - 495515..495971 (-) 457 Protein_469 hypothetical protein -
  HUG14_RS02415 (HUG14_02415) - 495973..496377 (-) 405 WP_033900784.1 hypothetical protein -
  HUG14_RS02420 (HUG14_02420) - 496390..497016 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.00 Da        Isoelectric Point: 4.4496

>NTDB_id=476636 HUG14_RS02395 WP_187398479.1 492113..493051(-) (comYH) [Lactococcus lactis strain K_LL005]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRKSLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=476636 HUG14_RS02395 WP_187398479.1 492113..493051(-) (comYH) [Lactococcus lactis strain K_LL005]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAAAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.562

100

0.487
  comYH Streptococcus mutans UA159

48.243

100

0.484