Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JYA73_RS05700 Genome accession   NZ_CP071104
Coordinates   1196915..1197688 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain PS/BAC/317/16/W     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1191915..1202688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA73_RS05680 (JYA73_001137) trmFO 1192259..1193566 (+) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  JYA73_RS05685 (JYA73_001138) xerC 1193983..1194879 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  JYA73_RS05690 (JYA73_001139) hslV 1194876..1195421 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  JYA73_RS05695 (JYA73_001140) hslU 1195487..1196890 (+) 1404 WP_000379051.1 ATP-dependent protease ATPase subunit HslU -
  JYA73_RS05700 (JYA73_001141) codY 1196915..1197688 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JYA73_RS05705 (JYA73_001142) - 1197739..1197831 (+) 93 WP_031788481.1 hypothetical protein -
  JYA73_RS05710 (JYA73_001143) rpsB 1198030..1198797 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  JYA73_RS05715 (JYA73_001144) - 1198831..1198944 (+) 114 WP_103219905.1 hypothetical protein -
  JYA73_RS05720 (JYA73_001145) tsf 1198979..1199860 (+) 882 WP_000201387.1 translation elongation factor Ts -
  JYA73_RS05725 (JYA73_001146) pyrH 1199997..1200719 (+) 723 WP_211022092.1 UMP kinase -
  JYA73_RS05730 (JYA73_001147) frr 1200738..1201292 (+) 555 WP_001280006.1 ribosome recycling factor -
  JYA73_RS05735 (JYA73_001148) - 1201665..1202435 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=476269 JYA73_RS05700 WP_000055337.1 1196915..1197688(+) (codY) [Staphylococcus aureus strain PS/BAC/317/16/W]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=476269 JYA73_RS05700 WP_000055337.1 1196915..1197688(+) (codY) [Staphylococcus aureus strain PS/BAC/317/16/W]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428