Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JY392_RS21780 Genome accession   NZ_CP071073
Coordinates   4465909..4466376 (+) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain 3347558     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4460909..4471376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JY392_RS21735 (JY392_21730) rplP 4461019..4461429 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  JY392_RS21740 (JY392_21735) rpsC 4461442..4462143 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  JY392_RS21745 (JY392_21740) rplV 4462161..4462493 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  JY392_RS21750 (JY392_21745) rpsS 4462508..4462786 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  JY392_RS21755 (JY392_21750) rplB 4462803..4463624 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  JY392_RS21760 (JY392_21755) rplW 4463642..4463944 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  JY392_RS21765 (JY392_21760) rplD 4463941..4464546 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  JY392_RS21770 (JY392_21765) rplC 4464557..4465186 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  JY392_RS21775 (JY392_21770) rpsJ 4465219..4465530 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  JY392_RS21780 (JY392_21775) pilD 4465909..4466376 (+) 468 WP_000338336.1 A24 family peptidase Machinery gene
  JY392_RS21785 (JY392_21780) bfr 4466373..4466849 (-) 477 WP_000675515.1 bacterioferritin -
  JY392_RS21790 (JY392_21785) bfd 4466922..4467116 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JY392_RS21795 (JY392_21790) tuf 4467299..4468483 (-) 1185 WP_000031783.1 elongation factor Tu -
  JY392_RS21800 (JY392_21795) fusA 4468554..4470668 (-) 2115 WP_000124703.1 elongation factor G -
  JY392_RS21805 (JY392_21800) rpsG 4470765..4471235 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=476038 JY392_RS21780 WP_000338336.1 4465909..4466376(+) (pilD) [Escherichia coli strain 3347558]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=476038 JY392_RS21780 WP_000338336.1 4465909..4466376(+) (pilD) [Escherichia coli strain 3347558]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368