Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H8P15_RS08080 Genome accession   NZ_CP060420
Coordinates   1615025..1615804 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain J17-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610025..1620804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8P15_RS08060 (H8P15_08060) trmFO 1610711..1612019 (+) 1309 Protein_1549 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H8P15_RS08065 (H8P15_08065) xerC 1612089..1613006 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  H8P15_RS08070 (H8P15_08070) hslV 1613022..1613567 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  H8P15_RS08075 (H8P15_08075) hslU 1613575..1614987 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  H8P15_RS08080 (H8P15_08080) codY 1615025..1615804 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H8P15_RS08085 (H8P15_08085) flgB 1616158..1616547 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  H8P15_RS08090 (H8P15_08090) flgC 1616547..1616999 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  H8P15_RS08095 (H8P15_08095) fliE 1617010..1617330 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  H8P15_RS08100 (H8P15_08100) fliF 1617373..1618983 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  H8P15_RS08105 (H8P15_08105) fliG 1618996..1620012 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  H8P15_RS08110 (H8P15_08110) fliH 1620005..1620760 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=475963 H8P15_RS08080 WP_003154263.1 1615025..1615804(+) (codY) [Bacillus velezensis strain J17-4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=475963 H8P15_RS08080 WP_003154263.1 1615025..1615804(+) (codY) [Bacillus velezensis strain J17-4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471