Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JHY03_RS04655 Genome accession   NZ_CP071044
Coordinates   1093843..1095210 (-) Length   455 a.a.
NCBI ID   WP_207563860.1    Uniprot ID   -
Organism   Streptomyces sp. CA-256286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088843..1100210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHY03_RS04630 (JHY03_09280) - 1089025..1089372 (-) 348 WP_015607370.1 DUF6167 family protein -
  JHY03_RS04635 (JHY03_09290) - 1089380..1089838 (-) 459 WP_094213096.1 DUF948 domain-containing protein -
  JHY03_RS04640 (JHY03_09300) - 1090079..1092289 (+) 2211 WP_207563859.1 tetratricopeptide repeat protein -
  JHY03_RS04645 (JHY03_09310) rpsD 1092307..1092921 (-) 615 WP_015607373.1 30S ribosomal protein S4 -
  JHY03_RS04650 (JHY03_09320) - 1093110..1093811 (+) 702 WP_031123613.1 DUF2470 domain-containing protein -
  JHY03_RS04655 (JHY03_09330) rarA 1093843..1095210 (-) 1368 WP_207563860.1 replication-associated recombination protein A Machinery gene
  JHY03_RS04660 (JHY03_09340) - 1095263..1095901 (-) 639 WP_031123615.1 vitamin K epoxide reductase family protein -
  JHY03_RS04665 (JHY03_09350) hisS 1096174..1097436 (-) 1263 WP_031123616.1 histidine--tRNA ligase -
  JHY03_RS04670 (JHY03_09360) - 1097457..1098146 (-) 690 WP_055561324.1 MBL fold metallo-hydrolase -
  JHY03_RS04675 (JHY03_09370) - 1098295..1099089 (+) 795 WP_031123618.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48357.65 Da        Isoelectric Point: 6.2451

>NTDB_id=475910 JHY03_RS04655 WP_207563860.1 1093843..1095210(-) (rarA) [Streptomyces sp. CA-256286]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRILDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLESLTDDDLRDLLRRALTDERGLGGALTLPEDAEAHVLRVAGGDARRALTALEAAAGAALATHEAEI
SLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRHGAEARYADVVERVRERLGRTGGGADPS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=475910 JHY03_RS04655 WP_207563860.1 1093843..1095210(-) (rarA) [Streptomyces sp. CA-256286]
GTGGAGCCCGACCTCTTTACCGCAGCCGCAGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTTGCTGTCCGGAT
GCGTCCGCGCATCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCGCTGCGCCGGCTCGTCGAGG
GGAGCGGTGGTCCGGCCGGTGCGTCGTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGGAAGACGACCCTGGCGTACGTC
GTCAGCAAGGCGACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCCGGGGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGCCGCGCCACCGGTGGGTACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACCCTGATCGCCGCCACCACGGAGAATCCGTACTTCTCG
ATCATCTCCCCGCTGCTGTCGCGGTCCCTGCTGCTCACCCTGGAATCGCTGACCGACGACGACCTGCGTGATCTGCTGCG
CCGGGCGCTGACCGACGAGCGCGGGCTCGGCGGTGCCCTCACCCTGCCCGAGGACGCGGAGGCGCATGTGCTGCGCGTCG
CGGGCGGAGACGCGCGCCGGGCGCTCACTGCCCTGGAGGCGGCGGCCGGTGCGGCGCTCGCCACGCACGAGGCGGAGATC
TCCCTGGAGACGGTCGAGGCCACCGTCGACCGGGCCGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCCGCCCTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGCCTCGCCGACCCCACCGCGCTGCCG
ACGGCGGTGGCGGCCGCCCAGGCCGTCGCGATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACGATCGC
CCTCGCGCTCGCGCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCCGCGCAGGAGGACGTGCGCAAGGGGCTCGCCG
GGCCCGTCCCGGCCCATCTGCGTGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCATGCCCAGGGCTATGTCTATCCG
CACGACGTCCAGGGCGGTATCGCCGCCCAGCAGTACGCGCCGGACGCGGTCCGCGACCGGCAGTACTACACCCCCACCAG
GCACGGCGCCGAGGCGAGGTACGCGGACGTGGTCGAGCGGGTCCGCGAGCGCCTGGGGCGTACGGGCGGCGGCGCGGACC
CGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.009

95.385

0.42