Detailed information NTG0475716

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JS608_RS15650
• Genome accession: NZ_CP071042
• Coordinates: 3164358..3165626 (+)
• Length: 422 a.a.
• NCBI ID: WP_044053489.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens isolate ELA1901024
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3159358..3170626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JS608_RS15630 (JS608_03126)	-	3160729..3161349 (-)	621	WP_088005508.1	lipopolysaccharide assembly protein LapB	-
JS608_RS15635 (JS608_03127)	mnmA	3161437..3162552 (-)	1116	WP_015387903.1	tRNA 2-thiouridine(34) synthase MnmA	-
JS608_RS15640 (JS608_03128)	-	3162589..3163728 (-)	1140	WP_003152731.1	cysteine desulfurase family protein	-
JS608_RS15645 (JS608_03129)	cymR	3163747..3164163 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
JS608_RS15650 (JS608_03130)	rarA	3164358..3165626 (+)	1269	WP_044053489.1	replication-associated recombination protein A	Machinery gene
JS608_RS15655 (JS608_03131)	-	3165702..3166466 (-)	765	WP_003152728.1	ThiF family adenylyltransferase	-
JS608_RS15665 (JS608_03133)	aspS	3166793..3168571 (-)	1779	WP_015387901.1	aspartate--tRNA ligase	-
JS608_RS15670 (JS608_03134)	hisS	3168586..3169860 (-)	1275	WP_003152726.1	histidine--tRNA ligase	-
JS608_RS15675 (JS608_03136)	-	3170217..3170387 (-)	171	WP_003152722.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46688.58 Da
• Isoelectric Point: 8.5461

>NTDB_id=475716 JS608_RS15650 WP_044053489.1 3164358..3165626(+) (rarA) [Bacillus amyloliquefaciens isolate ELA1901024]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIRQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=475716 JS608_RS15650 WP_044053489.1 3164358..3165626(+) (rarA) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGTCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCGAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGATGAAGTGCACAGACTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAGGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGGACGA
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCGTTCCAAAAATCGATCCGGGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCACCGAAATCAAACTCCGCCATTTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCCCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905