Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H7696_RS15450 Genome accession   NZ_CP060386
Coordinates   3274218..3274943 (+) Length   241 a.a.
NCBI ID   WP_186584546.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Vb1833     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3269218..3279943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7696_RS15435 (H7696_15435) - 3270351..3272672 (+) 2322 WP_132936679.1 Tex family protein -
  H7696_RS15440 (H7696_15440) - 3272777..3273241 (-) 465 WP_005379316.1 hypothetical protein -
  H7696_RS15445 (H7696_15445) bioH 3273366..3274133 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  H7696_RS15450 (H7696_15450) comF 3274218..3274943 (+) 726 WP_186584546.1 ComF family protein Machinery gene
  H7696_RS15455 (H7696_15455) nfuA 3275041..3275625 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  H7696_RS15460 (H7696_15460) nudE 3275802..3276371 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  H7696_RS15465 (H7696_15465) cysQ 3276416..3277243 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H7696_RS15470 (H7696_15470) - 3277536..3278297 (-) 762 WP_017635007.1 type II secretion system protein N -
  H7696_RS15475 (H7696_15475) - 3278299..3278790 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27770.03 Da        Isoelectric Point: 9.4186

>NTDB_id=475591 H7696_RS15450 WP_186584546.1 3274218..3274943(+) (comF) [Vibrio alginolyticus strain Vb1833]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQCITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=475591 H7696_RS15450 WP_186584546.1 3274218..3274943(+) (comF) [Vibrio alginolyticus strain Vb1833]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGTGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.539

100

0.705
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477