Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JYA46_RS04205 Genome accession   NZ_CP070991
Coordinates   814636..815409 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain CBS2016-05     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 809636..820409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS04170 (JYA46_000834) - 809889..810659 (-) 771 WP_000473705.1 isoprenyl transferase -
  JYA46_RS04175 (JYA46_000835) frr 811032..811586 (-) 555 WP_001280006.1 ribosome recycling factor -
  JYA46_RS04180 (JYA46_000836) pyrH 811605..812327 (-) 723 WP_000057330.1 UMP kinase -
  JYA46_RS04185 (JYA46_000837) tsf 812464..813345 (-) 882 WP_000201387.1 translation elongation factor Ts -
  JYA46_RS04190 (JYA46_000838) - 813380..813493 (-) 114 WP_001789890.1 hypothetical protein -
  JYA46_RS04195 (JYA46_000839) rpsB 813527..814294 (-) 768 WP_031786209.1 30S ribosomal protein S2 -
  JYA46_RS04200 (JYA46_000840) - 814493..814585 (-) 93 WP_031788481.1 hypothetical protein -
  JYA46_RS04205 (JYA46_000841) codY 814636..815409 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JYA46_RS04210 (JYA46_000842) hslU 815434..816837 (-) 1404 WP_098817802.1 ATP-dependent protease ATPase subunit HslU -
  JYA46_RS04215 (JYA46_000843) hslV 816903..817448 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  JYA46_RS04220 (JYA46_000844) xerC 817445..818341 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  JYA46_RS04225 (JYA46_000845) trmFO 818758..820065 (-) 1308 WP_072491544.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=475467 JYA46_RS04205 WP_000055337.1 814636..815409(-) (codY) [Staphylococcus aureus strain CBS2016-05]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=475467 JYA46_RS04205 WP_000055337.1 814636..815409(-) (codY) [Staphylococcus aureus strain CBS2016-05]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGTGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428