Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H7F27_RS12315 Genome accession   NZ_CP060193
Coordinates   2463115..2464014 (-) Length   299 a.a.
NCBI ID   WP_024121389.1    Uniprot ID   A0A7G7U910
Organism   Bacillus sp. PAMC26543     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2458115..2469014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS12300 (H7F27_12300) xerC 2458484..2459398 (-) 915 WP_024121392.1 tyrosine recombinase XerC -
  H7F27_RS12305 (H7F27_12305) trmFO 2459466..2460773 (-) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H7F27_RS12310 (H7F27_12310) topA 2460849..2462924 (-) 2076 WP_024121390.1 type I DNA topoisomerase -
  H7F27_RS12315 (H7F27_12315) dprA 2463115..2464014 (-) 900 WP_024121389.1 DNA-processing protein DprA Machinery gene
  H7F27_RS12320 (H7F27_12320) sucD 2464075..2464977 (-) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  H7F27_RS12325 (H7F27_12325) sucC 2465006..2466163 (-) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  H7F27_RS12330 (H7F27_12330) - 2466337..2466618 (-) 282 WP_024121387.1 FlhB-like flagellar biosynthesis protein -
  H7F27_RS12335 (H7F27_12335) - 2466615..2468345 (-) 1731 WP_185847974.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32998.24 Da        Isoelectric Point: 9.3933

>NTDB_id=474515 H7F27_RS12315 WP_024121389.1 2463115..2464014(-) (dprA) [Bacillus sp. PAMC26543]
MDQAAACLITCRINQLLSPSLLLKWWKADPSLSLSNPSCALETASRGKVRAAALKNKIEEQYPKFQHLLSVYHQQGIKVI
PISSDQYPFWLKNIYDPPPVLFAKGDISLLSLGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=474515 H7F27_RS12315 WP_024121389.1 2463115..2464014(-) (dprA) [Bacillus sp. PAMC26543]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCATTGTCACTGTCAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAATTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAAACATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCTAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTAGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCGGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7U910

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

82.943

100

0.829