Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H7F27_RS12285 Genome accession   NZ_CP060193
Coordinates   2455687..2456466 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. PAMC26543     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2450687..2461466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS12255 (H7F27_12255) fliH 2450707..2451459 (-) 753 WP_024121397.1 flagellar assembly protein FliH -
  H7F27_RS12260 (H7F27_12260) fliG 2451452..2452468 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  H7F27_RS12265 (H7F27_12265) fliF 2452481..2454091 (-) 1611 WP_024121396.1 flagellar basal-body MS-ring/collar protein FliF -
  H7F27_RS12270 (H7F27_12270) fliE 2454137..2454457 (-) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  H7F27_RS12275 (H7F27_12275) flgC 2454468..2454920 (-) 453 WP_024121394.1 flagellar basal body rod protein FlgC -
  H7F27_RS12280 (H7F27_12280) flgB 2454920..2455309 (-) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  H7F27_RS12285 (H7F27_12285) codY 2455687..2456466 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H7F27_RS12290 (H7F27_12290) hslU 2456505..2457878 (-) 1374 WP_185848941.1 HslU--HslV peptidase ATPase subunit -
  H7F27_RS12295 (H7F27_12295) clpQ 2457926..2458471 (-) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  H7F27_RS12300 (H7F27_12300) xerC 2458484..2459398 (-) 915 WP_024121392.1 tyrosine recombinase XerC -
  H7F27_RS12305 (H7F27_12305) trmFO 2459466..2460773 (-) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=474514 H7F27_RS12285 WP_003220850.1 2455687..2456466(-) (codY) [Bacillus sp. PAMC26543]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=474514 H7F27_RS12285 WP_003220850.1 2455687..2456466(-) (codY) [Bacillus sp. PAMC26543]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAAGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATACTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTAGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467