Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   H7F27_RS05195 Genome accession   NZ_CP060193
Coordinates   1053433..1054077 (+) Length   214 a.a.
NCBI ID   WP_101864137.1    Uniprot ID   -
Organism   Bacillus sp. PAMC26543     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048433..1059077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS05170 (H7F27_05170) - 1048789..1049157 (-) 369 WP_024122684.1 hypothetical protein -
  H7F27_RS05175 (H7F27_05175) degQ 1049618..1049758 (+) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  H7F27_RS05180 (H7F27_05180) - 1049943..1050812 (+) 870 WP_101864136.1 polyprenyl synthetase family protein -
  H7F27_RS05185 (H7F27_05185) comX 1050809..1051030 (+) 222 WP_059292642.1 competence pheromone ComX -
  H7F27_RS05190 (H7F27_05190) comP 1051046..1053352 (+) 2307 WP_185848673.1 histidine kinase Regulator
  H7F27_RS05195 (H7F27_05195) comA 1053433..1054077 (+) 645 WP_101864137.1 two-component system response regulator ComA Regulator
  H7F27_RS05200 (H7F27_05200) - 1054095..1054475 (+) 381 WP_024122679.1 hotdog fold thioesterase -
  H7F27_RS05205 (H7F27_05205) mnhG 1054514..1054888 (-) 375 WP_185848674.1 monovalent cation/H(+) antiporter subunit G -
  H7F27_RS05210 (H7F27_05210) - 1054872..1055156 (-) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  H7F27_RS05215 (H7F27_05215) - 1055156..1055632 (-) 477 WP_185848675.1 Na+/H+ antiporter subunit E -
  H7F27_RS05220 (H7F27_05220) - 1055638..1057119 (-) 1482 WP_103671366.1 Na+/H+ antiporter subunit D -
  H7F27_RS05225 (H7F27_05225) - 1057112..1057453 (-) 342 WP_095713974.1 Na(+)/H(+) antiporter subunit C -
  H7F27_RS05230 (H7F27_05230) - 1057453..1057884 (-) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24123.45 Da        Isoelectric Point: 4.6788

>NTDB_id=474486 H7F27_RS05195 WP_101864137.1 1053433..1054077(+) (comA) [Bacillus sp. PAMC26543]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=474486 H7F27_RS05195 WP_101864137.1 1053433..1054077(+) (comA) [Bacillus sp. PAMC26543]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991