Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H7F26_RS14650 Genome accession   NZ_CP060192
Coordinates   2842659..2842946 (+) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus sp. PAMC28748     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837659..2847946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F26_RS14630 (H7F26_14630) - 2839305..2839679 (+) 375 WP_003181373.1 DUF4440 domain-containing protein -
  H7F26_RS14635 (H7F26_14635) - 2839817..2841049 (-) 1233 WP_003181374.1 aminopeptidase -
  H7F26_RS14640 (H7F26_14640) - 2841140..2841271 (-) 132 WP_003181378.1 protein YkpC -
  H7F26_RS14645 (H7F26_14645) mreBH 2841345..2842352 (-) 1008 WP_003181381.1 rod-share determining protein MreBH -
  H7F26_RS14650 (H7F26_14650) abrB 2842659..2842946 (+) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H7F26_RS14655 (H7F26_14655) - 2843114..2844451 (+) 1338 WP_003181386.1 ATP-binding protein -
  H7F26_RS14660 (H7F26_14660) - 2844516..2845178 (+) 663 WP_003181388.1 TrkA family potassium uptake protein -
  H7F26_RS14665 (H7F26_14665) ade 2845306..2847027 (+) 1722 WP_003181389.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=474443 H7F26_RS14650 WP_003181383.1 2842659..2842946(+) (abrB) [Bacillus sp. PAMC28748]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=474443 H7F26_RS14650 WP_003181383.1 2842659..2842946(+) (abrB) [Bacillus sp. PAMC28748]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537