Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H7F25_RS06675 Genome accession   NZ_CP060191
Coordinates   1351671..1352450 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. PAMC28571     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346671..1357450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F25_RS06655 (H7F25_06655) trmFO 1347375..1348679 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H7F25_RS06660 (H7F25_06660) xerC 1348742..1349659 (+) 918 WP_103132420.1 tyrosine recombinase XerC -
  H7F25_RS06665 (H7F25_06665) hslV 1349674..1350219 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  H7F25_RS06670 (H7F25_06670) hslU 1350236..1351636 (+) 1401 WP_185854403.1 HslU--HslV peptidase ATPase subunit -
  H7F25_RS06675 (H7F25_06675) codY 1351671..1352450 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H7F25_RS06680 (H7F25_06680) flgB 1352739..1353128 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  H7F25_RS06685 (H7F25_06685) flgC 1353128..1353580 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  H7F25_RS06690 (H7F25_06690) fliE 1353592..1353909 (+) 318 WP_024424178.1 flagellar hook-basal body complex protein FliE -
  H7F25_RS06695 (H7F25_06695) fliF 1353959..1355551 (+) 1593 WP_185854404.1 flagellar basal-body MS-ring/collar protein FliF -
  H7F25_RS06700 (H7F25_06700) fliG 1355563..1356579 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  H7F25_RS06705 (H7F25_06705) fliH 1356572..1357336 (+) 765 WP_056766434.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=474355 H7F25_RS06675 WP_007499612.1 1351671..1352450(+) (codY) [Bacillus sp. PAMC28571]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=474355 H7F25_RS06675 WP_007499612.1 1351671..1352450(+) (codY) [Bacillus sp. PAMC28571]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471