Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   JRY11_RS06630 Genome accession   NZ_CP070382
Coordinates   1220289..1221068 (+) Length   259 a.a.
NCBI ID   WP_023189059.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1215289..1226068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS06595 (JRY11_001324) - 1215327..1215419 (+) 93 WP_238785246.1 RinA family protein -
  JRY11_RS06600 (JRY11_001325) - 1215431..1215673 (+) 243 WP_238785249.1 DUF722 domain-containing protein -
  JRY11_RS06605 (JRY11_001326) - 1215773..1218013 (+) 2241 WP_023189065.1 glycoside hydrolase domain-containing protein -
  JRY11_RS06610 (JRY11_001327) - 1218043..1218336 (-) 294 WP_025017162.1 hypothetical protein -
  JRY11_RS06615 (JRY11_001328) - 1218553..1218843 (+) 291 WP_124175219.1 hypothetical protein -
  JRY11_RS06620 (JRY11_001329) - 1218833..1219087 (+) 255 WP_023189062.1 phage holin -
  JRY11_RS06625 (JRY11_001331) - 1219259..1220095 (+) 837 Protein_1245 peptidoglycan amidohydrolase family protein -
  JRY11_RS06630 (JRY11_001332) endA 1220289..1221068 (+) 780 WP_023189059.1 DNA/RNA non-specific endonuclease Machinery gene
  JRY11_RS06635 (JRY11_001333) - 1221159..1221608 (-) 450 WP_025017176.1 GNAT family N-acetyltransferase -
  JRY11_RS06640 (JRY11_001334) - 1221757..1222872 (+) 1116 WP_023189057.1 AI-2E family transporter -
  JRY11_RS06645 (JRY11_001335) - 1222994..1224331 (+) 1338 WP_021722264.1 hemolysin family protein -
  JRY11_RS06650 (JRY11_001336) pflA 1224549..1225343 (+) 795 WP_003130318.1 pyruvate formate-lyase-activating protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29113.10 Da        Isoelectric Point: 9.3107

>NTDB_id=474154 JRY11_RS06630 WP_023189059.1 1220289..1221068(+) (endA) [Lactococcus lactis strain KF140]
MKNKKIIPLLIVSIFILGGCANSQSDMDKSNHKWSQKDKTPSEELAKSVLTSSIKEQLKTDNIKFDHGSFIVNNNNNDLA
IINVVDPYAKNEIDIQGRPYLGEAVLPKSIQNNEKDNKDEKVIPQFGWGQKSNLKGFYKKAYTKGFLLNSKLIGGVKDFN
DSGSNMENIFTQTVWASEANDSSSKGQKYFENMIHKVQDKNMIIKYRVKALYVGSNLVPSGTEIEAKSDDFSLEIHVFIP
NVQPNLKVDYKTGQVTEVK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=474154 JRY11_RS06630 WP_023189059.1 1220289..1221068(+) (endA) [Lactococcus lactis strain KF140]
ATGAAGAACAAAAAAATTATCCCATTACTGATTGTCAGCATTTTTATCTTAGGGGGCTGTGCTAACAGTCAATCTGATAT
GGATAAAAGTAATCATAAATGGAGTCAAAAAGATAAGACACCCTCAGAAGAACTCGCAAAAAGTGTTCTGACTTCTTCAA
TAAAAGAACAATTAAAAACAGATAACATAAAATTTGATCACGGTTCATTTATCGTTAATAATAATAACAATGATTTAGCA
ATTATTAATGTTGTAGACCCATACGCTAAGAATGAAATAGATATTCAAGGGCGTCCTTATTTGGGTGAAGCAGTTCTCCC
AAAATCTATTCAAAATAATGAAAAGGATAATAAAGATGAAAAAGTGATTCCTCAATTTGGTTGGGGACAAAAATCTAACT
TGAAAGGCTTCTATAAAAAAGCTTATACTAAAGGTTTTTTGCTAAATAGCAAACTAATAGGTGGCGTTAAAGATTTCAAT
GATAGCGGGTCAAATATGGAAAATATATTTACTCAAACGGTTTGGGCGAGTGAAGCTAATGATTCAAGTTCCAAGGGACA
AAAATATTTTGAAAATATGATTCATAAAGTTCAAGATAAGAATATGATCATCAAGTATAGAGTGAAAGCACTCTATGTTG
GAAGTAACCTTGTCCCATCAGGAACTGAAATAGAAGCAAAATCTGATGATTTTTCACTCGAGATACATGTTTTTATTCCA
AATGTTCAACCAAATCTTAAAGTAGATTATAAAACAGGTCAGGTCACTGAAGTCAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

42.174

88.803

0.375
  endA Streptococcus pneumoniae D39

42.174

88.803

0.375
  endA Streptococcus pneumoniae R6

42.174

88.803

0.375
  endA Streptococcus pneumoniae TIGR4

42.174

88.803

0.375