Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GWQ54_RS32465 Genome accession   NZ_CP070373
Coordinates   7352475..7354697 (-) Length   740 a.a.
NCBI ID   WP_167153089.1    Uniprot ID   -
Organism   Streptomyces sp. MBT27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7347475..7359697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS32450 - 7347707..7348018 (+) 312 WP_161253645.1 heavy-metal-associated domain-containing protein -
  GWQ54_RS32455 - 7348110..7350596 (+) 2487 WP_275901391.1 heavy metal translocating P-type ATPase -
  GWQ54_RS32460 - 7350997..7352295 (-) 1299 WP_100578456.1 citrate synthase -
  GWQ54_RS32465 recD/recD2/recDB 7352475..7354697 (-) 2223 WP_167153089.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GWQ54_RS32470 - 7355214..7355786 (+) 573 WP_167153088.1 DUF937 domain-containing protein -
  GWQ54_RS32475 - 7355884..7356123 (-) 240 WP_161253636.1 hypothetical protein -
  GWQ54_RS32480 - 7356273..7357415 (+) 1143 WP_205380383.1 CapA family protein -
  GWQ54_RS32485 - 7357960..7359009 (-) 1050 WP_167153087.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79346.97 Da        Isoelectric Point: 7.1109

>NTDB_id=474089 GWQ54_RS32465 WP_167153089.1 7352475..7354697(-) (recD/recD2/recDB) [Streptomyces sp. MBT27]
MSSLTGAAVVEGVLERITYANEESGYTVARVDTGRGGNDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTV
LPATIQGIRRYLGSGLIKGIGPVFADRITQHFGADTLDVIEQDPKRLIEVPGLGPKRTKKIAAAWEEQKAIKEVMVFLQG
VGVSTSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPE
ERLIADAVKLLQVDTGLVIECLAELIAEEGAVREKVPGPDGGEPVAAVYLVPFHRAELSLAAQVGRLLRTGEDRMPSFAG
VDWDKALGWLAARTGAELAPEQQEAVKLALTSKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELT
GAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLMVGDVDQLPSVGAGEVLRDLL
AEGGPVPSVRLTRIFRQAQKSGVVTNAHRINSGSPPITSGLDDFFLFVEDETEDAGRLTVDVVARRIPAKFGLDPRRDIQ
VLAPMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGLNGVFNGTVGVVTALNLDDQRLTV
LTDEDEEVPYDFDELDELSHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRT
VSAGRRFTALAHRLAGGTLV

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=474089 GWQ54_RS32465 WP_167153089.1 7352475..7354697(-) (recD/recD2/recDB) [Streptomyces sp. MBT27]
ATGTCCAGTCTCACGGGTGCGGCGGTGGTGGAGGGGGTCCTCGAACGGATCACGTACGCCAATGAGGAGAGCGGATACAC
CGTCGCGCGGGTCGACACCGGCCGCGGCGGCAACGATCTGCTCACCGTGGTCGGCTCGCTGCTCGGCGCGCAGCCGGGGG
AGTCGCTGCGGATGGAGGGCCGTTGGGGCTCCCATCCCCAGTACGGCAAGCAGTTCACCGTCGAGAACTACACGACGGTG
CTGCCCGCCACCATCCAGGGCATCCGGCGCTACCTCGGCTCCGGCCTCATCAAGGGCATCGGCCCGGTCTTCGCCGACCG
CATCACCCAGCACTTCGGCGCCGACACCCTCGACGTCATCGAGCAGGACCCGAAGCGCCTGATCGAGGTCCCCGGGCTCG
GGCCCAAGCGGACCAAGAAGATCGCCGCCGCGTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTCTTCCTGCAAGGG
GTTGGGGTCTCCACCTCCATTGCCGTGCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCGGTCGTGAAGAACCAGCC
CTACCGGCTGGCCGCCGACGTCTGGGGCATCGGATTCCTCACCGCCGACAAGATCGCCCAGGCCGTCGGCATCCCGCACG
ACAGCCCGGAGCGGGTGAAGGCGGGCCTGCAGTACGCGCTGTCCCAGTCCACCGATCAGGGGCACTGTTTCCTGCCCGAG
GAGCGCCTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACCGGGCTCGTCATCGAGTGCCTCGCCGAGCTCATCGC
CGAGGAGGGGGCCGTGCGCGAGAAGGTCCCGGGGCCCGACGGGGGCGAGCCCGTCGCCGCCGTCTACCTCGTGCCGTTCC
ACCGCGCCGAGCTGTCGCTGGCCGCCCAGGTCGGCCGGCTGCTGCGGACCGGCGAGGACCGGATGCCGTCCTTCGCCGGG
GTGGACTGGGACAAGGCGCTCGGCTGGCTGGCCGCACGCACCGGCGCCGAGCTCGCCCCCGAGCAGCAGGAGGCCGTGAA
GCTGGCGCTGACCAGCAAGGTCGCCGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCCTTCACGGTCCGCTCGATCGTGG
AGCTGGCCCGCGCCAAGAAGGCCAAGGTCGTCCTCGCCGCGCCGACCGGGCGGGCCGCCAAACGCCTGGCCGAGCTGACC
GGTGCCGAGGCCTCCACCGTGCACCGCCTGCTCGAACTGAAGCCGGGCGGCGACGCGGCGTACGACAAGGACCGGCCGCT
GGACGCGGACCTGGTCGTCGTCGATGAGGCCTCCATGCTCGACCTGCTGCTCGCCAACAAGCTGGTCAAAGCGGTGGCCC
CGGGCGCCCATCTGCTGATGGTGGGTGACGTCGACCAGCTGCCCTCGGTCGGTGCCGGCGAGGTGCTGCGCGATCTGCTC
GCCGAGGGCGGTCCCGTCCCCAGCGTGCGTCTTACCCGGATCTTCCGGCAGGCACAGAAGTCCGGCGTCGTCACCAACGC
CCACCGCATCAACTCCGGCTCCCCGCCCATCACTTCGGGCCTCGACGACTTCTTCCTGTTCGTCGAGGACGAGACGGAGG
ACGCGGGCCGGCTCACCGTCGACGTCGTGGCCCGCCGCATCCCGGCGAAGTTCGGGCTCGACCCGCGCCGCGACATCCAG
GTGCTCGCCCCGATGCACCGCGGGCCGGCCGGTGCCGGCACCCTCAACGGCCTGCTCCAGCAGGCGATCACACCTGCCCG
GCCCGACCTGCCGGAGAAAAGGTTCGGTGGAAGGGTGTTCCGCGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACG
AGAAGGGCCTCAACGGCGTCTTCAACGGCACCGTCGGCGTGGTCACCGCGCTCAACCTCGACGACCAGCGCCTGACGGTC
CTGACCGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTCGACGAGCTGTCCCACGCCTACGCCGTGACGATCCA
CCGCTCCCAGGGCAGCGAGTACCCGGCCGTCGTCATCCCGGTCACCACCAGCGCCTGGATGATGCTCCAGCGCAATCTGC
TCTACACGGCGGTGACCCGGGCCAAGAAGCTCGTCGTCCTGGTGGGGTCCCGCAAGGCGATCGGTCAGGCGGTGCGTACC
GTTTCCGCAGGCAGGCGCTTTACCGCACTGGCTCACCGGCTGGCAGGGGGCACTTTGGTGTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-640)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(660-708)

Helix-hairpin-helix domain (HHH_5)

(97-146)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-237)

AAA domain (AAA_30)

(337-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.248

100

0.365