Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   GWQ54_RS26040 Genome accession   NZ_CP070373
Coordinates   5903609..5904964 (-) Length   451 a.a.
NCBI ID   WP_161245100.1    Uniprot ID   A0ABQ3ADY3
Organism   Streptomyces sp. MBT27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5898609..5909964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWQ54_RS26020 - 5899070..5901235 (+) 2166 WP_167154930.1 tetratricopeptide repeat protein -
  GWQ54_RS26025 rpsD 5901257..5901871 (-) 615 WP_053723667.1 30S ribosomal protein S4 -
  GWQ54_RS26030 - 5902097..5902777 (+) 681 WP_167154926.1 DUF2470 domain-containing protein -
  GWQ54_RS26035 - 5902789..5903505 (-) 717 WP_167154923.1 HNH endonuclease family protein -
  GWQ54_RS26040 rarA 5903609..5904964 (-) 1356 WP_161245100.1 replication-associated recombination protein A Machinery gene
  GWQ54_RS26045 - 5905029..5905667 (-) 639 WP_167154920.1 vitamin K epoxide reductase family protein -
  GWQ54_RS38150 - 5905874..5906220 (+) 347 Protein_5183 histidine kinase -
  GWQ54_RS38155 - 5906206..5906553 (+) 348 Protein_5184 response regulator transcription factor -
  GWQ54_RS26055 hisS 5906739..5908001 (-) 1263 WP_167154917.1 histidine--tRNA ligase -
  GWQ54_RS26060 - 5908016..5908726 (-) 711 WP_167154914.1 MBL fold metallo-hydrolase -
  GWQ54_RS26065 - 5908879..5909658 (+) 780 WP_167154911.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47802.25 Da        Isoelectric Point: 6.1975

>NTDB_id=474075 GWQ54_RS26040 WP_161245100.1 5903609..5904964(-) (rarA) [Streptomyces sp. MBT27]
MEPDLFTAAAEDRQEKDPAGSPLAVRMRPRVLDEVVGQQHLLKQGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRAIGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRALVRRALSEERGLGSAVTLPADAESHLLRIAGGDARRALTALEAAAGSALAKSEQE
ITLQTLEETVDRAAVTYDKGGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLIISASEDIGLADPTAL
PTAVAAAQAVALIGFPEAALTLSHATIALALAPKSNSATTAIAAAMADVRAGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDVPGAIASQQYAPDAVADKRYYEPTRYGAEARYADVVEKVRERLARGEE

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=474075 GWQ54_RS26040 WP_161245100.1 5903609..5904964(-) (rarA) [Streptomyces sp. MBT27]
GTGGAACCCGATCTTTTCACCGCAGCCGCAGAGGACCGCCAGGAGAAAGACCCGGCGGGCAGCCCTCTGGCCGTACGGAT
GCGTCCGCGCGTCCTCGACGAGGTGGTGGGCCAGCAGCACCTCCTGAAGCAGGGCTCGCCGCTGCGCCGCCTCGTGGGGG
AGGGCGCCGGCGGCCCGGCCGGCCCGTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACGGGCAAGACGACGCTCGCGTAC
GTGGTGTCCAAGGCCACGAACAAGCGGTTCGTCGAACTCTCGGCGATCACCGCCGGGGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCGCGCCGTGCCATCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CTCAGCAGGACTCGCTGCTCCCCGCCGTCGAGAACCGCTGGGTCACCCTGATCGCGGCCACGACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTCCTGCTCACGCTCGAACCGCTGACCGACGACGACCTGCGGGCCCTGGT
GCGGCGGGCGCTGAGCGAGGAGCGGGGCCTCGGCTCCGCGGTCACCCTGCCGGCGGACGCCGAGTCGCACCTGCTGCGCA
TCGCCGGTGGGGACGCCCGCCGCGCGCTGACCGCCCTGGAGGCGGCGGCCGGTTCGGCGCTCGCCAAGTCCGAGCAGGAG
ATCACGCTCCAGACGCTCGAAGAGACCGTCGACCGCGCGGCCGTGACGTACGACAAGGGCGGCGACCAGCACTACGACGT
GGCGAGCGCACTGATCAAATCGATCCGCGGCTCGGACGTGGACGCGGCGCTGCACTATCTGGCCCGGATGATCGAAGCGG
GCGAGGACCCCCGCTTCATCGCCCGGCGCCTGATCATCTCCGCGAGCGAGGACATCGGTCTGGCCGATCCCACCGCGCTG
CCGACGGCGGTGGCGGCCGCCCAGGCCGTGGCCCTCATCGGCTTCCCCGAGGCGGCCCTGACGCTGAGCCATGCCACGAT
CGCGCTCGCGCTCGCCCCGAAGTCCAACTCCGCGACGACGGCGATCGCCGCCGCGATGGCGGACGTCCGGGCAGGCCTCG
CGGGCCCGGTCCCGCCCCATCTGCGCGACGGCCACTACAAGGGCGCCGCCAAGCTGGGGCACGCCCAGGGTTACGTCTAC
CCGCACGACGTCCCCGGCGCGATCGCCTCCCAGCAGTACGCACCGGACGCGGTGGCCGACAAGCGCTACTACGAGCCGAC
GCGCTACGGCGCGGAGGCGCGGTACGCGGATGTGGTGGAGAAGGTCCGGGAGCGTCTGGCGCGCGGCGAGGAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(200-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.548

95.565

0.426