Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H5404_RS24100 Genome accession   NZ_CP060088
Coordinates   3442617..3443729 (-) Length   370 a.a.
NCBI ID   WP_140219663.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3437617..3448729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS24070 (H5404_24070) hemF 3438078..3438995 (-) 918 WP_005461426.1 oxygen-dependent coproporphyrinogen oxidase -
  H5404_RS24075 (H5404_24075) - 3439043..3439600 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  H5404_RS24080 (H5404_24080) purE 3439800..3440285 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  H5404_RS24085 (H5404_24085) - 3440290..3441423 (+) 1134 WP_140219665.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  H5404_RS24090 (H5404_24090) - 3441487..3442056 (-) 570 WP_021449061.1 type I DNA topoisomerase -
  H5404_RS24095 (H5404_24095) - 3442135..3442614 (-) 480 WP_005461440.1 DUF494 family protein -
  H5404_RS24100 (H5404_24100) dprA 3442617..3443729 (-) 1113 WP_140219663.1 DNA-processing protein DprA Machinery gene
  H5404_RS24105 (H5404_24105) - 3443713..3444807 (-) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  H5404_RS24110 (H5404_24110) def 3444946..3445464 (+) 519 WP_005461416.1 peptide deformylase -
  H5404_RS24115 (H5404_24115) fmt 3445498..3446445 (+) 948 WP_029804725.1 methionyl-tRNA formyltransferase -
  H5404_RS24120 (H5404_24120) rsmB 3446526..3447809 (+) 1284 WP_140219661.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39910.62 Da        Isoelectric Point: 6.5879

>NTDB_id=473913 H5404_RS24100 WP_140219663.1 3442617..3443729(-) (dprA) [Vibrio parahaemolyticus strain TJA114]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLARRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPPLL
ANVGSEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=473913 H5404_RS24100 WP_140219663.1 3442617..3443729(-) (dprA) [Vibrio parahaemolyticus strain TJA114]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGTGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGTTTAGCGCGGCGAGTAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCCAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCCGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGACGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.784

100

0.838
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.462

100

0.405
  dprA Neisseria meningitidis MC58

38.462

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.34

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

36.082

100

0.378