Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H5404_RS08725 Genome accession   NZ_CP060088
Coordinates   149081..149806 (-) Length   241 a.a.
NCBI ID   WP_140219294.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144081..154806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS08700 (H5404_08700) - 145199..145690 (+) 492 WP_005458943.1 type II secretion system protein M -
  H5404_RS08705 (H5404_08705) - 145692..146453 (+) 762 WP_020904372.1 type II secretion system protein N -
  H5404_RS08710 (H5404_08710) cysQ 146740..147567 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H5404_RS08715 (H5404_08715) nudE 147609..148178 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  H5404_RS08720 (H5404_08720) nfuA 148399..148983 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  H5404_RS08725 (H5404_08725) comF 149081..149806 (-) 726 WP_140219294.1 ComF family protein Machinery gene
  H5404_RS08730 (H5404_08730) bioH 149891..150658 (+) 768 WP_021486851.1 pimeloyl-ACP methyl ester esterase BioH -
  H5404_RS08735 (H5404_08735) - 150782..151246 (+) 465 WP_140219292.1 ATP-dependent Lon protease -
  H5404_RS08740 (H5404_08740) - 151380..153701 (-) 2322 WP_140219290.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27814.91 Da        Isoelectric Point: 8.8467

>NTDB_id=473876 H5404_RS08725 WP_140219294.1 149081..149806(-) (comF) [Vibrio parahaemolyticus strain TJA114]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLAPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPSD
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=473876 H5404_RS08725 WP_140219294.1 149081..149806(-) (comF) [Vibrio parahaemolyticus strain TJA114]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTGCGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTAGTGAT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

49.167

99.585

0.49