Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H5405_RS11095 Genome accession   NZ_CP060085
Coordinates   2294879..2295658 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain HAB-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2289879..2300658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5405_RS11065 (H5405_11065) fliH 2289923..2290678 (-) 756 WP_007611429.1 flagellar assembly protein FliH -
  H5405_RS11070 (H5405_11070) fliG 2290671..2291687 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  H5405_RS11075 (H5405_11075) fliF 2291700..2293310 (-) 1611 WP_007611422.1 flagellar basal-body MS-ring/collar protein FliF -
  H5405_RS11080 (H5405_11080) fliE 2293353..2293673 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  H5405_RS11085 (H5405_11085) flgC 2293684..2294136 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  H5405_RS11090 (H5405_11090) flgB 2294136..2294525 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  H5405_RS11095 (H5405_11095) codY 2294879..2295658 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H5405_RS11100 (H5405_11100) hslU 2295696..2297099 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  H5405_RS11105 (H5405_11105) hslV 2297116..2297661 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  H5405_RS11110 (H5405_11110) xerC 2297677..2298594 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  H5405_RS11115 (H5405_11115) trmFO 2298664..2299971 (-) 1308 WP_007611407.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=473805 H5405_RS11095 WP_003154263.1 2294879..2295658(-) (codY) [Bacillus velezensis strain HAB-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=473805 H5405_RS11095 WP_003154263.1 2294879..2295658(-) (codY) [Bacillus velezensis strain HAB-2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471