Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JTC67_RS17385 Genome accession   NZ_CP070229
Coordinates   3442097..3442564 (-) Length   155 a.a.
NCBI ID   WP_000340163.1    Uniprot ID   -
Organism   Escherichia coli strain EC12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3437097..3447564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTC67_RS17360 (JTC67_17210) rpsG 3437238..3437708 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JTC67_RS17365 (JTC67_17215) fusA 3437805..3439919 (+) 2115 WP_000124700.1 elongation factor G -
  JTC67_RS17370 (JTC67_17220) tuf 3439990..3441174 (+) 1185 WP_000031783.1 elongation factor Tu -
  JTC67_RS17375 (JTC67_17225) bfd 3441357..3441551 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JTC67_RS17380 (JTC67_17230) bfr 3441624..3442100 (+) 477 WP_000675515.1 bacterioferritin -
  JTC67_RS17385 (JTC67_17235) pilD 3442097..3442564 (-) 468 WP_000340163.1 prepilin peptidase Machinery gene
  JTC67_RS17390 (JTC67_17240) rpsJ 3442943..3443254 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JTC67_RS17395 (JTC67_17245) rplC 3443287..3443916 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JTC67_RS17400 (JTC67_17250) rplD 3443927..3444532 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JTC67_RS17405 (JTC67_17255) rplW 3444529..3444831 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JTC67_RS17410 (JTC67_17260) rplB 3444849..3445670 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JTC67_RS17415 (JTC67_17265) rpsS 3445687..3445965 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JTC67_RS17420 (JTC67_17270) rplV 3445980..3446312 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JTC67_RS17425 (JTC67_17275) rpsC 3446330..3447031 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JTC67_RS17430 (JTC67_17280) rplP 3447044..3447454 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17079.25 Da        Isoelectric Point: 8.1216

>NTDB_id=473663 JTC67_RS17385 WP_000340163.1 3442097..3442564(-) (pilD) [Escherichia coli strain EC12]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCYPDGLADALWGAIIGYSTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTLLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=473663 JTC67_RS17385 WP_000340163.1 3442097..3442564(-) (pilD) [Escherichia coli strain EC12]
ATGGATGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTACCAGGTTTGTTATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACAGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTATTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCCTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CATTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTTGGCTGGGATAGTTTGCTGGCCGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368