Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H6S61_RS09750 Genome accession   NZ_CP060047
Coordinates   1954479..1955189 (-) Length   236 a.a.
NCBI ID   WP_026050271.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1949479..1960189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS09720 (H6S61_09720) gspL 1949674..1950873 (+) 1200 WP_045590016.1 type II secretion system protein GspL -
  H6S61_RS09725 (H6S61_09725) - 1950881..1951372 (+) 492 WP_017789549.1 type II secretion system protein M -
  H6S61_RS09730 (H6S61_09730) - 1951374..1952135 (+) 762 WP_185890331.1 type II secretion system protein N -
  H6S61_RS09735 (H6S61_09735) cysQ 1952252..1953079 (-) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  H6S61_RS09740 (H6S61_09740) nudE 1953094..1953648 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  H6S61_RS09745 (H6S61_09745) nfuA 1953764..1954348 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  H6S61_RS09750 (H6S61_09750) comF 1954479..1955189 (-) 711 WP_026050271.1 ComF family protein Machinery gene
  H6S61_RS09755 (H6S61_09755) bioH 1955278..1956045 (+) 768 WP_080532378.1 pimeloyl-ACP methyl ester esterase BioH -
  H6S61_RS09760 (H6S61_09760) - 1956183..1956653 (+) 471 WP_011078928.1 hypothetical protein -
  H6S61_RS09765 (H6S61_09765) ltrA 1957280..1958572 (+) 1293 WP_185892304.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27290.04 Da        Isoelectric Point: 9.6760

>NTDB_id=473557 H6S61_RS09750 WP_026050271.1 1954479..1955189(-) (comF) [Vibrio vulnificus strain 2497-87]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCRHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=473557 H6S61_RS09750 WP_026050271.1 1954479..1955189(-) (comF) [Vibrio vulnificus strain 2497-87]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATTTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCGGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCACCACTGCTGCTCTCGGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTGTTGGCCGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCTGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47