Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6K15_RS11085 Genome accession   NZ_CP070152
Coordinates   2134985..2135452 (+) Length   155 a.a.
NCBI ID   WP_022646190.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1285     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129985..2140452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K15_RS11040 (I6K15_11040) rplP 2130095..2130505 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  I6K15_RS11045 (I6K15_11045) rpsC 2130518..2131219 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6K15_RS11050 (I6K15_11050) rplV 2131237..2131569 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6K15_RS11055 (I6K15_11055) rpsS 2131584..2131862 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6K15_RS11060 (I6K15_11060) rplB 2131879..2132700 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6K15_RS11065 (I6K15_11065) rplW 2132718..2133020 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6K15_RS11070 (I6K15_11070) rplD 2133017..2133622 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6K15_RS11075 (I6K15_11075) rplC 2133633..2134262 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6K15_RS11080 (I6K15_11080) rpsJ 2134295..2134606 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6K15_RS11085 (I6K15_11085) pilD 2134985..2135452 (+) 468 WP_022646190.1 A24 family peptidase Machinery gene
  I6K15_RS11090 (I6K15_11090) bfr 2135449..2135925 (-) 477 WP_000675515.1 bacterioferritin -
  I6K15_RS11095 (I6K15_11095) bfd 2135998..2136192 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6K15_RS11100 (I6K15_11100) tuf 2136375..2137559 (-) 1185 WP_000031783.1 elongation factor Tu -
  I6K15_RS11105 (I6K15_11105) fusA 2137630..2139744 (-) 2115 WP_000124700.1 elongation factor G -
  I6K15_RS11110 (I6K15_11110) rpsG 2139841..2140311 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17064.20 Da        Isoelectric Point: 8.1255

>NTDB_id=473219 I6K15_RS11085 WP_022646190.1 2134985..2135452(+) (pilD) [Escherichia coli strain FDAARGOS_1285]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLATAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=473219 I6K15_RS11085 WP_022646190.1 2134985..2135452(+) (pilD) [Escherichia coli strain FDAARGOS_1285]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATTCTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGACTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368