Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6K11_RS12240 Genome accession   NZ_CP070134
Coordinates   2305672..2306139 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1281     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2300672..2311139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K11_RS12195 (I6K11_12205) rplP 2300782..2301192 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  I6K11_RS12200 (I6K11_12210) rpsC 2301205..2301906 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6K11_RS12205 (I6K11_12215) rplV 2301924..2302256 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6K11_RS12210 (I6K11_12220) rpsS 2302271..2302549 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6K11_RS12215 (I6K11_12225) rplB 2302566..2303387 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6K11_RS12220 (I6K11_12230) rplW 2303405..2303707 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6K11_RS12225 (I6K11_12235) rplD 2303704..2304309 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6K11_RS12230 (I6K11_12240) rplC 2304320..2304949 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6K11_RS12235 (I6K11_12245) rpsJ 2304982..2305293 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6K11_RS12240 (I6K11_12250) pilD 2305672..2306139 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  I6K11_RS12245 (I6K11_12255) bfr 2306136..2306612 (-) 477 WP_000675515.1 bacterioferritin -
  I6K11_RS12250 (I6K11_12260) bfd 2306685..2306879 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6K11_RS12255 (I6K11_12265) tuf 2307062..2308246 (-) 1185 WP_000031783.1 elongation factor Tu -
  I6K11_RS12260 (I6K11_12270) fusA 2308317..2310431 (-) 2115 WP_000124703.1 elongation factor G -
  I6K11_RS12265 (I6K11_12275) rpsG 2310528..2310998 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=473050 I6K11_RS12240 WP_000340159.1 2305672..2306139(+) (pilD) [Escherichia coli strain FDAARGOS_1281]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=473050 I6K11_RS12240 WP_000340159.1 2305672..2306139(+) (pilD) [Escherichia coli strain FDAARGOS_1281]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368