Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4995_RS04895 Genome accession   NZ_CP059972
Coordinates   927936..928451 (-) Length   171 a.a.
NCBI ID   WP_057044125.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C220     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 922936..933451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4995_RS04880 (H4995_04880) - 924168..924707 (-) 540 WP_002778842.1 iron transporter -
  H4995_RS04885 (H4995_04885) - 924704..926794 (-) 2091 WP_182101537.1 FTR1 family protein -
  H4995_RS04890 (H4995_04890) - 927299..927936 (-) 638 Protein_954 DUF2920 family protein -
  H4995_RS04895 (H4995_04895) ctsG 927936..928451 (-) 516 WP_057044125.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4995_RS04900 (H4995_04900) tsaD 928452..929459 (-) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4995_RS04905 (H4995_04905) - 929456..930850 (-) 1395 WP_057044127.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4995_RS04910 (H4995_04910) dxr 930852..931922 (-) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4995_RS04915 (H4995_04915) cdsA 931919..932644 (-) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  H4995_RS04920 (H4995_04920) - 932653..932991 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.53 Da        Isoelectric Point: 6.4682

>NTDB_id=472973 H4995_RS04895 WP_057044125.1 927936..928451(-) (ctsG) [Campylobacter jejuni strain C220]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSNNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472973 H4995_RS04895 WP_057044125.1 927936..928451(-) (ctsG) [Campylobacter jejuni strain C220]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAATAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93