Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4986_RS02040 Genome accession   NZ_CP059971
Coordinates   378939..379454 (+) Length   171 a.a.
NCBI ID   WP_057044125.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C34     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373939..384454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4986_RS02015 (H4986_02015) - 374399..374737 (+) 339 WP_002852397.1 hypothetical protein -
  H4986_RS02020 (H4986_02020) cdsA 374746..375471 (+) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  H4986_RS02025 (H4986_02025) dxr 375468..376538 (+) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4986_RS02030 (H4986_02030) - 376540..377934 (+) 1395 WP_057044127.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4986_RS02035 (H4986_02035) tsaD 377931..378938 (+) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4986_RS02040 (H4986_02040) ctsG 378939..379454 (+) 516 WP_057044125.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4986_RS02045 (H4986_02045) - 379454..380043 (+) 590 Protein_398 DUF2920 family protein -
  H4986_RS02050 (H4986_02050) cheB' 380135..380689 (-) 555 WP_002853263.1 chemotaxis protein CheB -
  H4986_RS02055 (H4986_02055) rpiB 380856..381293 (+) 438 WP_002853308.1 ribose 5-phosphate isomerase B -
  H4986_RS02060 (H4986_02060) - 381293..381625 (+) 333 WP_002853247.1 membrane protein -
  H4986_RS02065 (H4986_02065) apt 381622..382170 (+) 549 WP_002859569.1 adenine phosphoribosyltransferase -
  H4986_RS02070 (H4986_02070) - 382189..382785 (+) 597 WP_002854047.1 DedA family protein -
  H4986_RS02075 (H4986_02075) - 382782..384233 (+) 1452 WP_002876027.1 leucyl aminopeptidase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.53 Da        Isoelectric Point: 6.4682

>NTDB_id=472939 H4986_RS02040 WP_057044125.1 378939..379454(+) (ctsG) [Campylobacter jejuni strain C34]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSNNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472939 H4986_RS02040 WP_057044125.1 378939..379454(+) (ctsG) [Campylobacter jejuni strain C34]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAATAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93