Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4989_RS06430 Genome accession   NZ_CP059970
Coordinates   1240006..1240521 (-) Length   171 a.a.
NCBI ID   WP_057044125.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C57     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235006..1245521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4989_RS06400 (H4989_06400) - 1235420..1236238 (-) 819 WP_002859220.1 Jag N-terminal domain-containing protein -
  H4989_RS06405 (H4989_06405) yidC 1236235..1237827 (-) 1593 WP_002859219.1 membrane protein insertase YidC -
  H4989_RS06410 (H4989_06410) yidD 1237824..1238165 (-) 342 WP_002869899.1 membrane protein insertion efficiency factor YidD -
  H4989_RS06415 (H4989_06415) rnpA 1238162..1238377 (-) 216 Protein_1260 ribonuclease P protein component -
  H4989_RS06420 (H4989_06420) - 1238397..1238756 (-) 360 Protein_1261 DUF115 domain-containing protein -
  H4989_RS06425 (H4989_06425) - 1238766..1240006 (-) 1241 Protein_1262 DUF2920 family protein -
  H4989_RS06430 (H4989_06430) ctsG 1240006..1240521 (-) 516 WP_057044125.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4989_RS06435 (H4989_06435) tsaD 1240522..1241529 (-) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4989_RS06440 (H4989_06440) - 1241526..1242920 (-) 1395 WP_057044127.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4989_RS06445 (H4989_06445) dxr 1242922..1243992 (-) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4989_RS06450 (H4989_06450) cdsA 1243989..1244714 (-) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  H4989_RS06455 (H4989_06455) - 1244723..1245061 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.53 Da        Isoelectric Point: 6.4682

>NTDB_id=472927 H4989_RS06430 WP_057044125.1 1240006..1240521(-) (ctsG) [Campylobacter jejuni strain C57]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSNNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472927 H4989_RS06430 WP_057044125.1 1240006..1240521(-) (ctsG) [Campylobacter jejuni strain C57]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAATAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93