Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4990_RS00350 Genome accession   NZ_CP059969
Coordinates   68474..68989 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain C109     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 63474..73989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4990_RS00325 (H4990_00325) - 63934..64272 (+) 339 WP_002852397.1 hypothetical protein -
  H4990_RS00330 (H4990_00330) cdsA 64281..65006 (+) 726 WP_182579326.1 phosphatidate cytidylyltransferase -
  H4990_RS00335 (H4990_00335) dxr 65003..66073 (+) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4990_RS00340 (H4990_00340) - 66075..67469 (+) 1395 WP_002853606.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4990_RS00345 (H4990_00345) tsaD 67466..68473 (+) 1008 WP_002884179.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4990_RS00350 (H4990_00350) ctsG 68474..68989 (+) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4990_RS00355 (H4990_00355) - 68989..69633 (+) 645 Protein_69 DUF2920 family protein -
  H4990_RS00360 (H4990_00360) - 69601..70206 (-) 606 WP_182579328.1 DUF2920 family protein -
  H4990_RS00365 (H4990_00365) pstB 70268..71008 (-) 741 WP_002864529.1 phosphate ABC transporter ATP-binding protein PstB -
  H4990_RS00370 (H4990_00370) pstA 71005..72093 (-) 1089 WP_002787363.1 phosphate ABC transporter permease PstA -
  H4990_RS00375 (H4990_00375) pstC 72090..73004 (-) 915 WP_032581161.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=472883 H4990_RS00350 WP_002799196.1 68474..68989(+) (ctsG) [Campylobacter jejuni strain C109]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472883 H4990_RS00350 WP_002799196.1 68474..68989(+) (ctsG) [Campylobacter jejuni strain C109]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942