Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4991_RS04620 Genome accession   NZ_CP059968
Coordinates   891116..891631 (+) Length   171 a.a.
NCBI ID   WP_057044125.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C197     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 886116..896631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4991_RS04595 (H4991_04595) - 886576..886914 (+) 339 WP_002852397.1 hypothetical protein -
  H4991_RS04600 (H4991_04600) cdsA 886923..887648 (+) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  H4991_RS04605 (H4991_04605) dxr 887645..888715 (+) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4991_RS04610 (H4991_04610) - 888717..890111 (+) 1395 WP_057044127.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4991_RS04615 (H4991_04615) tsaD 890108..891115 (+) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4991_RS04620 (H4991_04620) ctsG 891116..891631 (+) 516 WP_057044125.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4991_RS04625 (H4991_04625) - 891631..891978 (+) 348 Protein_899 DUF2920 family protein -
  H4991_RS04630 (H4991_04630) - 891986..892183 (-) 198 Protein_900 ribonuclease Y -
  H4991_RS04635 (H4991_04635) - 892104..892730 (-) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  H4991_RS04640 (H4991_04640) - 892813..893370 (+) 558 WP_002859285.1 TlpA disulfide reductase family protein -
  H4991_RS04645 (H4991_04645) ftsY 893370..894236 (+) 867 WP_002852840.1 signal recognition particle-docking protein FtsY -
  H4991_RS04650 (H4991_04650) radA 894236..895576 (+) 1341 WP_002860437.1 DNA repair protein RadA -
  H4991_RS04655 (H4991_04655) atpB 895645..896325 (+) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  H4991_RS04660 (H4991_04660) - 896322..896513 (+) 192 WP_002852856.1 membrane protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.53 Da        Isoelectric Point: 6.4682

>NTDB_id=472871 H4991_RS04620 WP_057044125.1 891116..891631(+) (ctsG) [Campylobacter jejuni strain C197]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSNNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472871 H4991_RS04620 WP_057044125.1 891116..891631(+) (ctsG) [Campylobacter jejuni strain C197]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAATAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93