Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H4992_RS02150 Genome accession   NZ_CP059967
Coordinates   386544..387059 (-) Length   171 a.a.
NCBI ID   WP_002868456.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C201     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381544..392059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4992_RS02120 (H4992_02120) - 381687..382463 (-) 777 WP_002868588.1 threonine/serine exporter ThrE family protein -
  H4992_RS02125 (H4992_02125) ldh 382530..383456 (+) 927 WP_182577102.1 L-lactate dehydrogenase -
  H4992_RS02130 (H4992_02130) - 383453..384055 (-) 603 WP_002822507.1 DedA family protein -
  H4992_RS02135 (H4992_02135) - 384136..384363 (-) 228 WP_002822505.1 hypothetical protein -
  H4992_RS02140 (H4992_02140) omp50 384374..385801 (-) 1428 WP_002868586.1 outer membrane tyrosine kinase -
  H4992_RS02145 (H4992_02145) - 385978..386544 (-) 567 Protein_421 DUF2920 family protein -
  H4992_RS02150 (H4992_02150) ctsG 386544..387059 (-) 516 WP_002868456.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H4992_RS02155 (H4992_02155) tsaD 387060..388067 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H4992_RS02160 (H4992_02160) - 388064..389458 (-) 1395 WP_052798977.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H4992_RS02165 (H4992_02165) dxr 389460..390530 (-) 1071 WP_002868459.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H4992_RS02170 (H4992_02170) cdsA 390527..391252 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  H4992_RS02175 (H4992_02175) - 391261..391599 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18704.64 Da        Isoelectric Point: 6.4682

>NTDB_id=472833 H4992_RS02150 WP_002868456.1 386544..387059(-) (ctsG) [Campylobacter jejuni strain C201]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGILSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=472833 H4992_RS02150 WP_002868456.1 386544..387059(-) (ctsG) [Campylobacter jejuni strain C201]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTTAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936